Chr:
Chr2
Start:
6327886
End:
6328884
Strand:
-
Ref_name:
LOC107277652
Sequence
(XR_003241037.1):
CAUCUUCGCCUCAUCUUUAUUUUAAUCUUGCGUCCGCCACUGCUCUCUAUGAAUAUCGAUUAUCCAUGUUGCCUCUAUAAAUAAUAAUGACCCGGCACGAAAUGCUGGUAUCAGAUAUGAGCAGCGUGCAGAUCGUUUGAGCAGCUAGCAACAAAUUACAAGAGGGUGGUAGCUAGGCAGCUAGCUAGUUAGGCCGGAUGGCGCGGCUGCAGCGACGACGUCUCGUGCUGCCGCUCCUGCAGCUCGCCGUGGUGCUCUGGUUGGCGGCUACCAGCGGCUGCUUGUGCCGCCGGCCGCCGACCCCGAUCGCCGGCGUCCCGUCGCCGCCGAUUCUGCCGGACGGCGACCGGACACCGGAGUCGCCUCCAGCUCCCGUAUCCGCAAAACACCCGAACUUCUCGGUCCUUCCGCCGCCGGGCUGCUCGCCGGAUUGCACCGACCAGCAACGUCAGCCUUAAUUAGUUAGGGACUAUCAACGACGUACGUUCAGCAUAUAUACUCUGGUUGCAAACGUGUAAUUAUAUAGUAUGCUCUGUAAGUUCGUUCCGAUUUCAAAUGUAAUGCAAUUUAGCGCAUUGUAUAUUUGUAUUCUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.84%
ME_num:
MEP:
9.55%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.95
Avg Expression:
2.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.74413681834876 | 0.000436763686615752 |