Chr:
Chr3
Start:
10252165
End:
10255490
Strand:
-
Ref_name:
LOC107277633
Sequence
(XR_001544501.2):
GACUGCGGUUCCUCUCGACAAGGCCAUGGAGCUUGCUUCUUAGAAGUGCAACACAUGCAUCUCCCUCCCUCAUCAUAUCUUCUUCAUAAGUGGAGUGCGGUUCAUGAACUGUGUAAGAUGCUUCAUCAAGAUCUGUUGAUGGACCCAUGGUUGCAUGUGCCAUUGUGCUUAAUGGUGUAUCUACAGUGGCAUUCAUAAAUGUGAGGAACCAAAGCCAUCUAAUUGCCGGUACUGUAAAUGGCUGUACGUGGGACUCAUCAUUUUUCAAUUUGUAUAUCGAUAAGGUCAUCCACCACCGAUUCUCCCAGGUGUUUUGCACGCCAAGAUGGAGUGAACACACAUACAGCCUGGCAUGUUUUUCUUGUUAACAAAAGUUUUACCAAACAUAAUUACAUCGGUGAAGGCAACUUGAUACCUGCCACGGAAAAAGUGAGUUUUACUCCAGCUAAACAUCGGUGCGUGGCUGUGACCGGGAUGGCAACCCGUGUAGAAAUGUGGGCAUUGUGCGCAUCAGCGUCAGGCUUUUCCAGUGAAGUUUGGGCGGUGCUGGAUCUGAAGAUUGUUCUGGCUUGGCUACUGGUGUCAGAGACACAGAAUAUACGAGAUUUCUUCACGAAAGGUGACACCCUUGUAUUGCAUCAGCUCGCCGUUCAUCUUUCGGCUAGGGCAAAUUGUCAAUGUGGGGGCUCCGAUCACAUAUGACACAACUGGACCUUACCGACAGCGAGGUCCAGAAGAGAAAUCCUUCGGUGAUGACUGAUGAUGAAGUAAUUAGCAGAGCUGACGGAGACACGAGAGUAAUUCUUGGGUGAUGACUGAUUAUUACGGCCUUAAUGAUGGAAGAGACGCAUGGUUUGGUGCCGAACCACUGUGAGCGGAAGGACGGGAAAGGGAGCAAUGUCGCCGUCCGUCUGUCCCACUCGCCGAGCAGGACCGGUCGCCGGCCAGCCGUUGCCGGGACGCACGCCGGACGCGGAGGUGGGACAGCCGCAACAGCAACCUGCACUGCUCCGUGCUUAAUCACCGACACAUAUGCUGGCUGCAUCUGCAGUAUUUCUCCAAGGCUGCUGCACGCCGCACUUCUUUGUUCUGAUUUUCUCGUAGAGUAGUUGAUGGAUCCAUACACAAUAUAACCAGUACUAAUGAUUUAAUGAUUGUUUUAGACAAAAUUAUGGAAACUGGGUAAAGGUCCCAUUCACCGGAA
Sequence
(XR_003241287.1):
AGACUGCGGUUCCUCUCGACAAGGCCAUGGAGCUUGCUUCUUAGAAGUGCAACACAUGCAUCUCCCUCCCUCAUCAUAUCUUCUUCAUAAGUGGAGUGCGGUUCAUGAACUGUGUAAGAUGCUUCAUCAAGAUCUGUUGAUGGACCCAUGGUUGCAUGUGCCAUUGUGCUUAAUGGUGUAUCUACAGUGGCAUUCAUAAAUGUGAGGAACCAAAGCCAUCUAAUUGCCGGUACUGUAAAUGGCUGUACGUGGGACUCAUCAUUUUUCAAUUUGUAUAUCGAUAAGGUCAUCCACCACCGAUUCUCCCAGGUGUUUUGCACGCCAAGAUGGAGUGAACACACAUACAGCCUGGCAUGUUUUUCUUGUUAACAAAAGUUUUACCAAACAUAAUUACAUCGGUGAAGGCAACUUGAUACCUGCCACGGAAAAAGUGAGUUUUACUCCAGCUAAACAUCGGUGCGUGGCUGUGACCGGGAUGGCAACCCGUGUAGAAAUGUGGGCAUUGUGCGCAUCAGCGUCAGGCUUUUCCAGUGAAGUUUGGGCGGUGCUGGAUCUGAAGAUUGUUCUGGCUUGGCUACUGGUGUCAGAGACACAGAAUAUACGAGAUUUCUUCACGAAAGGUGACACCCUUGUAUUGCAUCAGCUCGCCGUUCAUCUUUCGGUUGUUUGUACGAUCCAACAGCUACCCGGGACUUUUUGCUUGACGGAACACACCUGUGUCUCACAUUCUCAGUUUCUCACUGUCUCAUAUGGCUUUCAGGCUAGGGCAAAUUGUCAAUGUGGGGGCUCCGAUCACAUAUGACACAACUGGACCUUACCGACAGCGAGGUCCAGAAGAGAAAUCCUUCGGUGAUGACUGAUGAUGAAGUAAUUAGCAGAGCUGACGGAGACACGAGAGUAAUUCUUGGGUGAUGACUGAUUAUUACGGCCUUAAUGAUGGAAGAGACGCAUGGUUUGGUGCCGAACCACUGUGAGCGGAAGGACGGGAAAGGGAGCAAUGUCGCCGUCCGUCUGUCCCACUCGCCGAGCAGGACCGGUCGCCGGCCAGCCGUUGCCGGGACGCACGCCGGACGCGGAGGUGGGACAGCCGCAACAGCAACCUGCACUGCUCCGUGCUUAAUCACCGACACAUAUGCUGGCUGCAUCUGCAGUAUUUCUCCAAGGCUGCUGCACGCCGCACUUCUUUGUUCUGAUUUUCUCGUAGAGUAGUUGAUGGAUCCAUACACAAUAUAACCAGUACUAAUGAUUUAAUGAUUGUUUUAGACAAAAUUAUGGAAACUGGGUAAAGGUCCCAUUCACCGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.41%
ME_num:
MEP:
35.77%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.83
Avg Expression:
3.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.53655369848759 | 0.000160007725485886 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.01929662251866 | 0.00931694263782766 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.44120935411065 | 0.000978906287966475 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.51153930694686 | 0.0433057470495249 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.24052457415227 | 0.0289832206963681 |
| 6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.74048046601257 | 4.31734815897671e-05 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.51922164732201 | 0.0487491057807488 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.84758682826806 | 7.13860670116108e-12 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.85715840420522 | 0.00560131696100422 |