Chr:
Chr10
Start:
7765667
End:
7767851
Strand:
+
Ref_name:
LOC107277630
Sequence
(XR_001540394.2):
UGAUGGAAAAUGAGUAAUGUUCGUAGGCAAUUAGUAUACAUACAUAUUAAGCUAUGUUUAGGGUCAUCAUCAAACAAUUGGAACAAUUAAACACUUCGAAAUUUCCAUACACGUGGGCUUGCUAUAUUUUGUAGUAAUAAACUUGGAACUUGUUUCAAGCUGAGAUUUUGUUCAAAAUUGCUGCUCUGUUAGUCCCCAACUGAUCACACAAGUUCACUCAGUUUACUCAUCAAGCUAACGAACUAAACAAUGGUGCCAUGCCAUCAACACUAAACCGAACUCUACGAGGUGGCAAAACACUGACAUGACACACUAACGAAUAACCAUCCAACCCAUGUGACGAAGGUGAGCUCAAAACCAGGAACCUUCACCAACCCAGCAGCAACAGUCUACUGCAAGACAGCUCGAAAUUUGGUUGCAUCUCCAACUCGCCUGCUUUGGGGCGUCCGGCUCAACCCCACCACGCUUGGGCAAUUCACCGAACAGCUACCGCGCAGAGGUGAGGUGACUCUAUACCGUCUCAGCAACAGCCAACAAGGGGCGAUCCCACAAUCUAAUCCAAUCCCACACCCACCUCCCUCGUUCCCGUAGCUAUUGAACAUGCACCGCCAACGCACGCGAACCUCGCUAAUGGAAAGGAAUCAACGGCGAUGUAUACGCACGCCGGGCGCGCUCGGCGGAGGAGAGGACCGGAACGAACGUAGCGGCCACAGUGGAGGAGGCUUAGGAGGGCUACAGCUUUCCCACACGUGAGGCAGCGGCCGGUGCCCUGCCCAGCAGCUACCUCUCCAGCUGGCUUGGCGGAGGGAGGGGGAUAAGAGCAUCUCCAACCGUCUCUUUAAAUCUAACUCUCCAAAUGUCUAUUUAGCUAACUCUCCAUUUAAUUAGCAAGUCAAAUUUAUUAUUUACUCCAACAGUCUCUCUAUCUGUUCUCUCUAUUGUGAGUGUAUGAUAGUGGAAUCCACAUGUCAGCAUCACCUCUUUCUUCCUCAUUUUGUCUCUCUUUUUCCCGGAAGGACUACAUGGAGCCUCCAUCGCCGCGCGCAGGGCCUUCGGCGAGGGCUCCCCGGCCGUGGCCGCCGCAUGGAAGCCACUUCACCAACCCUGUCCCUCCCUCCCGCCACCGCCGCAUGCAAGCCAUCCUCGCCGUUGGUCCCGGGGGCGCCGCCGCUGCCAGGGCGCUCGUCGUCGCCGAUGCCACCAAGAAGGCCGUCGCCGUACUCAAGGUCCUACAACAGUGAAUGGCCGCCGUCGCCACCCCCGACGCCUGGCGCACCCACGACUGGCGGAAGGCCGUCGACUACCACGCCACCCUCCUCGCCACCCUCCUCGCCAACGGCAUCCUUUCCCCGACCUCCCGCGCCAUUUGCCUCGGCGCCGUGCAGGAGGCCCUCGCCAUGCGGGAGCUCAGCGUCUCCACCGCCGUCGCCGUCGCCAGGAAGCGCUCCCCGCCGCUCGCUAUCGCUGGGAACGACCGCCGCCUCCCCUUCCCGGACUCCUCCGUCGACUUCAUCUAAACGGCGGCGCGCUCGUGGCCGGCGUGCCCUCCGAUUCUCCCCCGGCCGAUGCAGCUGAGAGAGAGGAAGGAUGGCUGGCUGAGGCUGGGAGGAGAGCUGGGAGUGAUGGUGGGACCCACCUUUCGCUAGUGGAGGAGGCUGGCUACAUUUGGCUAGCCGGUGGAGCAAUUUGGCUAUCCGAAUGCCUUGGCCAUCCGAAUGGAGAAUCUGUUAGAGCUUGUUUUUUCUCUGUAAUAGCUAAAUUUUAACUUGGAGAGUCAAAUAGAGAUUCUGUUGAAGAUGAUAUAAGCCGUGGGAGUAGGUGGGCGGGUACAACGAAUGAGACGGACACGAAUACGACCUGUGUGGGGGUAAUGGCCGAUCAGGCAAUGGGAAGAGGCGUGGGCCCGCGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.5%
ME_num:
MEP:
41.87%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
3.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 5.99255046801197 | 0.0105446460926454 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.83372922243868 | 0.0308176142303525 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.49686733032118 | 0.00266890038314526 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.90566883955553 | 0.0218407795645768 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.85782170407363 | 0.00583953323006957 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.49011477005676 | 0.0486186388438828 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.92960550863722 | 1.21403462500127e-05 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.3508572581748 | 1.38097970647727e-10 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.38973840355783 | 0.0489990045158682 |