RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107277617

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

7125499

End:

7127618

Strand:

+

Ref_name:

LOC107277617

Sequence
(XR_003239398.1):

CCGUUGCUCCACAGGAGCAUUUAACUGUCCAUUUGUCCACACCCCUCUCCAUCCGGUAAAUUGCAAACCGUCUUUCACCACCAAUGCACCUGCCUUUGAUGUGGACAGCCCCCUUUGCUCCAAACAAGAGCUUGAUUUGUGUUGUGUCGCUUGCAGUUGCACAAUCAAGAAGCUGGUCAGCUACAAAACUCUGUAACAUUAGGUAGAUGUCUCGAAAUGCUCUCGCAGCCUCCCCUUUGAGAUCAGCGAUAGUUGCUGCCUGUGGAAGAGUUAUGAGCUCUGCUGGGAUACAAGGUGGAUCAUCAACCUGGUCAGCUAGUUCCACUUGGCACCAAAUGUGCAACUGGGAUGGGUUUUGAGGUAAGAAGUCUUCUUCCAGAUCAUAAUGCUUGAUGAAUUGCUUGCAGUCCAAAAGGAUCAUUGCAGACCUCUUGGCAUGCUGAUAAUUUUCUUCUGGCAUAUAAGGAUGCAUUGUGUAUGGGUAGAGAAGCGCAUCAUACAAGAACUUGAUGUCACGGAAUAGGUGGUCUUGGGUUAGGGUGCACACGUUGUUUGGUGGGAAGAGGGUUUCAGUCGUAAGCCUGCAGUGAGAUAGUAGUUAGAAUUUGGAUCAUGAAACAAGCACUUAGUUAGCAUGCAAGUUGUAACAAAGAUAUGAGCCACCAACCUGUACUCUACAGUGUUCAUCUCACUGUUGCAUCGAAUUGCAACAACCAUCCCAUCGUCAGUUCUUGUACCACCAAGGGUCUUGAUGCAGUAAUCGACCAGCUGUGGCGAACCAAUUGGAUGGGAUGUAACUGCCUUUAGUGUCCGUGUAGCAACCCAUCUAUCUGCAGCACGGAGAAUUUUGAGAGCAAUGUUUGUUGCUCGCUGUAAUUCCUCUUCAGGGAAUUCCUCUUGAUAAUUGGCAUCAUAUGCCAUUUUCUCUUUGUGCACACUCUUGCCGGUGGCAAGCUCCAUUAUAUAGGCGAACAGUUCACGGAUUGUGGUGAGAGGGUGCCUUGAGAGAGAUUGGUAGAAUGCAAUGGUAUUUUGUAACUGGUUUCGUGGAGAUCGGGUGUGAGGGAAGAAGUUAGAGAGUGGCACUGAGGAUAGGCUUUCUACAGCUUUGGAGUAGUCUUGAGGUGUGAUUCCAAAGCUUCCGCUGCUAAGUUUGAAUCCCCACAGGCCAUACCAAGAACAGCCAGUGGCAACAGCAUGGAGGCUUCGGUAGUCAGCUCCAUACUUCUUCGAAACAUCUAUCACUGAGACUUUUCUGCAAUUUAUCAAGUUUUUUGACAUGUUAGUAUCAUCUGCUGAUUAUAAAUUAGAAGUGUUGAAUUGAAUGAUAUUGGCUUUGUUUGUGUUGAGUUCAUUAAUCAUAAAUCAUCACUUUACCUGACCCUGAGGUAUCUGCAGAGCCGAUCCCAGAAGUUAAUCAGUUGGGAUCCUGUCAUGACGCUGGAGCCUCCCUCACGGCCAUUAAUCCGAACAAGGUGGCCAAACCCGUUUUCAUGGACUAUGCCAUGCAGCAGAUGCCGUGGACUCUCCAGCUGCACAUAGUCCCAAUCUUCCGGAUCAUCCCGUGAGAGGCCAACGUGGUUGCAGGACGGACAUCUGAGGACAACAUUCACAAGAUGAGGCCACACAUGCCACCAUGAACCCGCAACGCCUGCAGGUUUUGGAGGUGCCAGUUUCAUUCUCAUUGCGAAUUAUGAAGUGGUACCUCUUGGAGCAAACAGGGUGCUUGCUCCAGCCUAUGUAACAAUAAGGCAAGUAAAUUUAGAUUUCAUCCAGAAUUGAGUUGCAAUAAUAAGCAAUCAAACAUAUCUAUAUAUCAAUCAAUCCAGCUCAUUUUAUAGCGCUGGAAUAGUUAUAAUAACAUCUAGAUUUGUUCAGUUCACAACCGGCAUGCAAACAUUACAAUGUAUGUAAGGCAGCAAUUUGCGUAGUUCAAUCCAGACGUUGCAGAGAUUAAUGCAUUCCGACGAAUUUAGUUCAAGUGUGAAUGAAAUAUAGAUACAUGAAUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

46

LEP:

9.35%

ME_num:

259

MEP:

52.64%

HE_num:

186

HEP:

37.8%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.73

Avg Expression:

15.80

Tip: OSA-LNC107277617 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"6.715220174178320.000994734645205595