RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107277396

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

15633708

End:

15637227

Strand:

+

Ref_name:

LOC107277396

Sequence
(XR_001547458.2):

UAUAUAAAAAAUAUUUGAAUUCAAAUUCAAAUUUGAAUCGGAUAUAAUUUAAAUUCAAAUUUGAAUCGGGUAUAUAAACUUUUAACUUAUAAACUUUGAGUCUAUAAACUUUUAAGUGUAUAAACUUAGAUGUAUAGAAAUACUAUAUAUAAAAAUAUUUGAAUUCAAAUUCAAAUUUAAAUCGGAUAUAUAAACUUUUGAUUUAUAAACUUUGGGUCACUAAACUUUAGAUGUGUAAACUUGAGGUGUACAAACUUUAGGUGUAUAAAUUUACUAAAAUAGAAAAGUAAUCCGGUGAGGGAGAGGGGAUCCGAAUCUGAUCGCUAGGGGAUAGAUCGCCCCUUAGCAAUCUCGCAUCUGAAUACCCAUGAAUCAAUUGUGGGCCCGCCCCGGAUUGAAGCCCACAAGAUGCAACGCGGCCCAAAGCUUGGCUCUCGUGAAGCCCAACAAGGCCCAAUGUUGAGAGACCCGGGUCCCAGCGCGGCAGCACCUCCGACUCGCCGUCGCCGGUGUUGGGUGGGUCGCGACGGCGUUCUCUCCCGCCGCCGCCGCCGGUGACCUCGUGCCCCCACCCGAUACUCCCCGGCAGCCGCUCGUGGACCAGAUCGACAGUGUCGCCUGAGAAGCCAACCCUACGGCUACAGCCACUGAGCCACCCUGACAUGAGGGCGAGCGCCGGGAGAACGGAGGAGAAAAAAAAAAGAGAAGAAAACCUCCGUUCCCGGCGACGGAGGAGGUCAGCGUCAGCGGCGGCGGCGUCGUUCCGAUGGCCGACGGGCCUGCCACGGACCCACGGUCUAAUGGAAUGUAUAUUCAGCUCUUUUGAGGAGGCUGGUGGUCUAGUUAACUUGUGUCCUCUCAAAAGGAAAAAUAAAAGAAAGAACAAAGAGCAGCUUUGAAUAGUUUAUGGCUACAACUACAAGGGUCAUGUGUGGUGCAACUUGGGCUGAAGACUGGGGUCUGGGGAUUCAGACUCAAGAUCCUGACGAUGAUGGAAUGGAUGACAAUCCCCUUUUAUGCGAUAGAAAGGUUCAGAUGGUCAGUUCUUUUAGUCGCAUUUUUCAUUAGGCUUUUUAUAUUAUUAACUUCUUAUUUGUACCAAAUACUAAAUUGUUCAAAUUUCAAAUGUUUGUCCCAAAAAACACCAGCUGGAUUGUUGACUGUGUGGUUUGCAUGCAUCAUUGGAAUCAAUCAAACAUUAGCAUCCAUUAAAAAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

344

LEP:

69.92%

ME_num:

147

MEP:

29.88%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.81

Avg Expression:

2.27

Tip: OSA-LNC107277396 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.819570828222430.0386693294315724