Chr:
Chr10
Start:
12753740
End:
12755842
Strand:
+
Ref_name:
LOC107277328
Sequence
(XR_001540866.2):
CAUGGUUGUUACAACUGAACUUCAAGGAACCAUCAAGAUCCAAGUCAUCUUGGUUGCCUAGUCAACUCUUUCUGUUCACAAGAGAUAAGUUGGCUGAAUUCUGUUAAUUAGUAGACUCCAAAUCAUUAGCUGUCCUGGGUUGUCUUGAGGCUAUCAUCAUAGCUUAGAAGAUGGCUAAUCUUGUGGCAAUGAACAUGAAGAGGAAAGAACAUGCUGAGGUGGCCAACAAUGGAUUGUCCAUCUUUCUUGAUCCUAAGAGGCUCAAAUUACAGGAUGGUGAGAUUCCAGACAUGAUGGAGGAAGAGAAACCAUCAGCAGGUGUUCAACUUGAUCCUAAUGUGCCAACCAUGGCCUUAUCAUGGAUGCUACCAACUCAGGGCCAAGAGACUACCCAUGACACUAUGAACACUGCAUAUGAGAUGUCAUCUUCAGAAACGCCGCCACUCAGAGCAGACCAAGCCGCCACCGCGGCGCCGAUGGACGUCGAGGUUCAGCUCCGGUAGCGGCAGCCUCAGGCGGCGCCGUGUCAGCAGGCUCAUUUCCGGUCAGGUUUCUUCUGAACUGUAAGAGGCUGCUGGAAUUGGGGGGAGUAAAAAUGACAAACUCCUACAAGUUGCUCUGAACUUGUAUUGGGGGGAGUAAAAAUGACAAACUCCUACAAGUUGCUCUGAACUCUGAACUUGUUAACGUUAGCAUGUGACUAGCAUAGGGUGUUUCCAAAUCCAUGUUGUCAUAUGCCACAAUGUGCUGAUCCAGACUAGUAUUUGUCGGAGCAAUGUAUGCUGAUUUGAUGGUUAAGAGUAUGCAAUGUGAAAUUCAUCUGCAGAUUCUCUCUUUCAGAUGAGUUUCGUGUAUUGUUUUGUGAGAAAUUACAUAAAAUAUCCAAAGAAAACCAUGUUUAGUGUAACGAUGCUGUUGAACGGACAGAAGCCUGGAGAGCCUUAGUCGCCUACUGCCCUUAACCAGAAUGUCAUGUGUCCAAUUAUUUCAUCUCAAAACACAAAUUCAUCUUCAGCAUUCCCUGAUUUAGUAUCAGAAAUUUGAUGGAUUAAACAAAGUGAACAUAAAAUUCUCAGACAGGGCAAAUGAAAUAAAUGAAAUAGACCACGGUCAUCGCACAGCUCAUUGUCUCAUAAGUGUCGUUUGGUACAAUUAGGGAGUAUGCAACUCUAAUCACUCCACACACUGUUAAGUAAUAACAUACAAGUAUACAACAAUGGUUUGCUGAGCACCUGUUCAGCUAUGAAUAUUGUCCCCUCCAGGGACAACAAAAGUAAAAAGAAAAAAAGAAUCAUGUAUGUGAAUUCUGGCUGUUAAGUGGAUUUUCCUGCCAAAAGGGCGACGGCAGAUUUUUAAUUUAGUUCCUUGAGCUGGUUCCCAUGCUGAAUGGCCAUCAAUUAUAACUGACUAUGACCUUUCUAUAGCCGAGUAACUGUUGAAAUCUCUGUUGUAGAAUUAUCUUGAAUAAAUGUGGCAGCAUGCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.79%
ME_num:
MEP:
27.24%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.91
Avg Expression:
7.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.92203761387483 | 0.0423827434507771 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.09348621298783 | 0.0160425952228502 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.83996502871519 | 7.78721242317827e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.8682966394352 | 4.51232916433173e-08 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.33569137401978 | 0.0164340489634691 |
| 6 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.16433001788208 | 0.00160935449747885 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.3695957430788 | 1.44883659767811e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.62572343875627 | 0.000513240907778678 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.16020912211023 | 5.67711702694297e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.39663601138785 | 2.61500632383492e-07 |