Chr:
Chr2
Start:
10851281
End:
10853939
Strand:
-
Ref_name:
LOC107277114
Sequence
(XR_001542991.2):
GAAGACGUCGCGAAGACUACGCGUCUAUGCCUCACCCUCUCCACGCGCGGCUCACUCCUCCCGUCAUGUACUGCCGCCGCCGCCUCAAUCCACCGCUACCCCCGCCGGAGCUGACUUCUUCUCCAGCCGCCGCCGGAGCCGAGGUCGUCCCCUUCCGCCGCCGCCGCGGCGCACUCCACCGCUGCCCUCGCCGGAUCCGAGGUCUUCCCCAGCCACCGCCGGAGACGUGGUCUUCCCAUCCGCCGCGGCCAGCCGUGGCCGGAGUUGACGUCGUCCCGAGUCGCCGCCGGAGCCGAGUCGUCCCCAGCCACCACCGGAACCGUGGUCUUCCCCAUCCGCCGCAGCCGCAAGAAUCGCUCAUUCACCCCACACCCGCACCCACGGCCACGCUGUGCUCUCCUCCACAACCAUGUCGAGCCCACAUCUGCCGUCGUUGACGCUCUUUCUACCAGAAGUCCAGAACACACAUACAUCAGCAUGAAGAUGAGAUGAUUCAGGUCAUUGAAUUGCUUUGCAUUCAUGCUAUCAUAUUUUGAUGUGUCAUUUAAUCAUGUUCUUCAUAUAUUUGUUUUUCCAAGAAGGGCAGCAGGUGACAGUUGUUGAUGCGGCCGUGUUUGGUGGUGUUCACAGUUCUUGAACUGCAGGAGUAAUCGGUUUGCUAACACAGACCUGAUCUCAAGGUGCUAUGCAGCUUCCAGUGAAUGUAUUGUCUUACUAUGAUCUGCACAUCCACCCGGGCAACUCUUUGCUUCCCAAAUUUGAUUGCUUGUGUUGCAUAUUUUUGCCGAUGUAGAAAUCAUAUGUUUUUAAUGUUGUAUGUCCUGACGGUUUGGCAACAAAUAUAUCCCCAGUAUCUUUUUGAGAACUAUCCUCAAUAUCUCACGGUAUUAUUUCAUUUGCACUCUAAAUGAAGAAUUUAAAAGAAUUAUAAAUGCAAUUUUCAAUCUGAUUUACCUUUGUACAUGAUUCAAGAUUCAGUGCAGCAGCUGUAGUCUUCCUCCCCAUAUCAGAAAGAAUGAAUCUUAAUGGUGAGGUAUAAUCCUAACGUUAUACAUUAUGCUUUCAUUUGCUCACAAUAAAACUUAAAUAAUGUUCAAUAUAAGUUCACAUAUUGUUCUAAAAGUUUUGUUUUGCAGAUUGGUAACAUUCACUCAUAUAUGUUGUCAGUUAGCUCAUGUCCUAUUGAUGCAAAUUUUGUUGUUCUCCUCUCUCUGCUUGGCCUCGGCUCACUGACAAACACCUCCUGUACCUUGCCCAUUCCUCUACAACUUUUAAUUGCAAUUGAAAGAUUUGGAACAACAGAAGAGGAAGAGAGAUUUGUAACUAUCUACAAUGCCAUUUGAGGGCCCAUCAUCUUCUUCCCGAAACUCCUAGUUGGCGAUUGAUCGCCAGGAGCGAUCGGUUUCCCCCCUCUCCUCCACGUGGUUUUCUUUUUUGGCACCACAUUACUUUUCUAUUUUAGUAAAUUUAUGAACCUAAAGUUUAUACACCUCAAGUUUACACA
Sequence
(XR_003240459.1):
CGAAGACGUCGCGAAGACUACGCGUCUAUGCCUCACCCUCUCCACGCGCGGCUCACUCCUCCCGUCAUGUACUGCCGCCGCCGCCUCAAUCCACCGCUACCCCCGCCGGAGCUGACUUCUUCUCCAGCCGCCGCCGGAGCCGAGGUCGUCCCCUUCCGCCGCCGCCGCGGCGCACUCCACCGCUGCCCUCGCCGGAUCCGAGGUCUUCCCCAGCCACCGCCGGAGACGUGGUCUUCCCAUCCGCCGCGGCCAGCCGUGGCCGGAGUUGACGUCGUCCCGAGUCGCCGCCGGAGCCGAGUCGUCCCCAGCCACCACCGGAACCGUGGUCUUCCCCAUCCGCCGCAGCCGCAAGAAUCGCUCAUUCACCCCACACCCGCACCCACGGCCACGCUGUGCUCUCCUCCACAACCAUGUCGAGCCCACAUCUGCCGUCGUUGACGCUCUUUCUACCAGAAGUCCAGAACACACAUACAUCAGCAUGAAGAUGAGAUGAUUCAGGUCAUUGAAUUGCUUUGCAUUCAUGCUAUCAUAUUUUGAUGUGUCAUUUAAUCAUGUUCUUCAUAUAUUUGUUUUUCCAAGAAGGGCAGCAGGUGACAGUUGUUGAUGCGGCCGUGUUUGGUGGUGUUCACAGUUCUUGAACUGCAGGAGUAAUCGGUUUGCUAACACAGACCUGAUCUCAAGGUGCUAUGCAGCUUCCAGUGAAUGUAUUGUCUUACUAUGAUCUGCACAUCCACCCGGGCAACUCUUUGCUUCCCAAAUUUGAUUGCUUGUGUUGCAUAUUUUUGCCGAUGUAGAAAUCAUAUGUUUUUAAUGUUGUAUGUCCUGACGGUUUGGCAACAAAUAUAUCCCCAGUAUCUUUUUGAGAACUAUCCUCAAUAUCUCACGGUAUUAUUUCAUUUGCACUCUAAAUGAAGAAUUUAAAAGAAUUAUAAAUGCAAUUUUCAAUCUGAUUUACCUUUGUACAUGAUUCAAGAUUCAGUGCAGCAGCUGUAGUCUUCCUCCCCAUAUCAGAAAGAAUGAAUCUUAAUGGUGAGGUAUAAUCCUAACGUUAUACAUUAUGCUUUCAUUUGCUCACAAUAAAACUUAAAUAAUGUUCAAUAUAAGUUCACAUAUUGUUCUAAAAGUUUUGUUUUGCAGAUUGGUAACAUUCACUCAUAUAUGUUGUCAGUUAGCUCAUGUCCUAUUGAUGCAAAUUUUGUUGUUCUCCUCUCUCUGCUUGGCCUCGGCUCACUGACAAACACCUCCUGUACCUUGCCCAUUCCUCUACAACUUUUAAUUGCAAUUGAAAGAUUUGGAACAACAGAAGAGGAAGAGAGAUUUGUAACUAUCUACAAUGCCAUUUGAGGUAGGUUAUGUACUGUUAAAAGUGUUUUAUCCAUUCAGUUAACUGAUAGGUAGUCUACUAUUUUGUGAGUUUUAAGUGUCAAGUGAAUGUGUACUGUACGAUGUAAUGGCUUGGUAAUUAUUAGUAAUCAGAAUUAGGGGAAGGUAAAUCUCUUCUUUUUAUCAUAGAGCAGCACAAAUAUGUAAUCAAUUAUUGGAUACUUUUUACCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.25%
ME_num:
MEP:
50.41%
HE_num:
HEP:
21.14%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.70
Avg Expression:
5.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.10403501953111 | 0.0184492194451896 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.36496056787514 | 0.0211024514004602 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.08069791120331 | 0.000116361362059732 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.0340988208332 | 0.000230722599778562 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.44267786501428 | 1.71222388968707e-08 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.57247032909466 | 1.24081168567942e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.32680693635709 | 3.59934978875161e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.23788346045307 | 0.00637869776220629 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.55285892900008 | 3.44791470945862e-05 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.37887649403515 | 2.87402479213531e-08 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.06535524821512 | 0.000938185424816723 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.12633413998233 | 0.000529586469380307 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.31246067658563 | 0.00116481687611809 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.94682866026467 | 8.54683805435034e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.08737519469863 | 0.000813783779923999 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.94693439539785 | 8.94676949509887e-05 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.94701282241761 | 8.60022554301202e-05 |
| 18 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.29109576041393 | 4.63604825724894e-07 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.38674431891843 | 6.47269627462767e-09 |
| 20 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.07316344892585 | 0.00579315351226887 |