RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107277086

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

335434

End:

337293

Strand:

+

Ref_name:

LOC107277086

Sequence
(XR_001544245.2):

CCACUUAUCUGUCCUCAACCUUUUUCCCCUCUACUCACAGCUCGCCAGCGUCCCUCCACUCACAGCUUGCCGGCGUGCGCCGCCGCUCCCCUCGCUUCCUCCACCUUCGCACGCCGGCGCUGCUGCGCCGCCGCUCCCCUCCAUUCCUCCGCCUCCCCAUGCCGGCGCUGCUGCGCCGUCGCUCCCCUCCCUCCCUCCGCCUCCCCCAUGACGACGGUGCCGCACCGCUGCUCCCAUCCCUUCCUCCGAUUCUGUCCACAGGUACCACUUAGCAGCAACCCCCUCUCAUGCAGCAGACUCAAACCAUAGGGUCUACAUCAAAGUUCAGUAGAUUUUCUGAUUUUUUAUAGACGAGGCCAAGGGAAGCCGUGAUGGGGGUGGCAAGAAAAUUAUAUCCCGUGAUGGGGUAGUCGUAUUUGAUACUUGACCUGUUAAAAUUAACAGAGUCGAUAUGGCUACAUGUUCAGAUAAUUCAGAUUCUGUACAUUUUGUGCCUAGUGGUCCAAGGCGCUCACCAAGGGUCAAGAAAUCCAACCAAUGUAAUGCUGAAGAGCAAAGGAGGAAAUGUGCCUCGAAACCUUGUACCAAGCUUAAAUUCCUACCAGAUAAAUCAAAUGCCAUUUGUGGCAACAAGAAAAGGAAGAAGAUGGAAACUGAAACGAAGGUUUCAGUGCACAAUCAGAAGCAGGUCAUUACCUUCAGCUGCUACUCGAGCCGCAUGUGCAAAAUAGCAUCUCAACUUUCACCUGUUCAGACUCAGUUUGUGCAUAAUGCUUGUUUUGAGAAUUUACUGUCAAUGCAAGUUUGUAGUAUGUCCAAAAGCAUGACACCGUGGCUUGUCAAUACAAUGAGAACCAGGCCAACUAUGUAGUGGUACCAUCAUUUUUUUUGUUUUUAACCAUGUGAAUAUGUGAACAAAUGUCACCAUGUAAUGGCUACUGCCAUGUCACCAUGUGAAAUACAUCCCAGCUUACCUUUCGUUUGCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

43

LEP:

8.74%

ME_num:

122

MEP:

24.8%

HE_num:

326

HEP:

66.26%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.74

Avg Expression:

23.04

Tip: OSA-LNC107277086 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h1.32487897368410.0424651237743663
2Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"-1.246406890446470.0232846187419317
3Nipponbare // leaf // control--/--Nipponbare // leaf // drought-1.24647934188740.0237739293990318
4Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"-1.246604944985840.0233374019254354