Chr:
Chr9
Start:
9689625
End:
9691345
Strand:
-
Ref_name:
LOC107276964
Sequence
(XR_001540061.2):
CCCUCGUCAUCGGCCGGGAAAUAUUCAGCUUCUCUGGUGGCGAGGAAAAAAUCCUCUCGACGCAGCGACGCAAUGAGAGGGGGCGCUGCGGCGGGGACGGCUGCACGGCGCGGCGCGACUACGACGUGACGGCAACGGCACGCUCUCUCCUCCGGUGGCCACCUUCUCCCCGGCUUUUGGAGGAAGUCUGAGAGGAUGGUGGUUCAGAUACAGAGUGAAUGAGCAAACAUGUACAAGAUGAUGGCUUUUUGCAGGAGCAACAAAUGUUGAUCUCUGAACCAUUGUAUAUUGCUGAUGUAACCAUUUGGUCUGGGAGUCCUGGUGUGGCAGCUCACAUUUAUUUUUAUAGCUCAAGUGAAUCAUGACAUAGUUUCAUCUUUUUCUUUUUUUAUUGUCAAAUUUCACUACUAUGACUGUAUUUAGUUGUCUCUGUAUUGUCAAGUGACCUCAAGCUUUGUUGGGUGAUGCCUCCUUGCCUUAAACCGGAUACAGGCCUUGAUGAUACUGCAAUAUUUUUGUUUUAAUGAUUAAUCAAUGUGAUUUUCGCGUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
12.2%
HE_num:
HEP:
84.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.47
Avg Expression:
23.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.17611165972174 | 0.00303858901845765 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.5142365880565 | 0.000672303149498394 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.26296505848247 | 0.0012662317263026 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.52160186025484 | 0.000238229940974349 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.51447201769531 | 0.00115675071166594 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.66415647412045 | 0.000252957057944 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.67062097394832 | 0.000269860009272744 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.17296886213433 | 0.0011259372746737 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.28477165746327 | 0.00284099861837714 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.69576176445788 | 4.99824233507385e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.20941812912586 | 0.00076471733255179 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.12648396408349 | 0.0178272604869826 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.9873439487879 | 0.00164489636757207 |