Chr:
Chr12
Start:
14540773
End:
14541645
Strand:
-
Ref_name:
LOC107276936
Sequence
(XR_001541999.2):
AUAGCCAGGUUAACCCUAGACCUAGAGAGUGGCUGUGUGGGUGGGGGCGUGCGGCACUCCCCAUUCCCCAACUCCCUCGGCAUCGGCGGCGCAUCCAGGUCCUGCGCGCCUGCAGCGCCGCCCCGCCCCUGCCACCGUCGUCCGUCGCCAGUCGUCUCCACCUCCCCUCGUCUUCCUCCUCGCCAUCUCUGCCGGCGGCGCCGACGCCUCGCUGUCUCGGCCGCCACACCACCUCCACGCGGCGACGCGGCGACGCCGGUCGCCGCACCACCUCGACGACCACGCAGCAACGCUGGCCGCCGCACCACCUCCACGCGGCGACGCCUGCCGCCGCACCACCACCACGCACCGACACGGUGACGCCGGCCGCCGCACCACCUCCACGCGCCGACACCUGCCAUCUCAACUCAACGAUUCAGCAUCUCGACAGAUCUGUGAUGGAUUCCUCACAUGCAACUAUGCAAGUAGCAGCAGUGCAACUGUAUGCUGUGCAAAUGUAGCUUAUCUGUGAUGGAUUUCUAUGUGCAAGUGAUUGAGAUGUGGUGAUGUAAUGAUGUGUGUGGUUUUUCAUGAUAUGUUUCAUUGGAAGUGAAUUGUACAAGUGUUGUUUUAGAUAAAUAAUGAGCUAUAUCUCUUCCUUGAUUUGAGAAGCUUAUUUUGAGGGGUUUUUGUACUUUGAUAAUUAUUCGUUACCAUAUUCGCUCCGUAUCUGUAUUCGACAAUAUUCGAUUCCGUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.73%
ME_num:
MEP:
25.2%
HE_num:
HEP:
28.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.88
Avg Expression:
36.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.1458067591288 | 1.04834360345334e-10 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.00620092151808 | 0.00294479667264703 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.30207351112693 | 2.79119014473672e-16 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.93565932410521 | 0.000141831681155846 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.28250673390707 | 0.0273893964345351 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.21353019564991 | 0.0121084559512823 |