Chr:
Chr4
Start:
32473395
End:
32474278
Strand:
+
Ref_name:
LOC107276866
Sequence
(XR_001545276.2):
UGGCAGCGCCCAUGCUCCUGCAGGGGGCUAGCUAGAGAGAAAACGACGAGAUAGCUAGCUAGCCAUGCAUGCAUCUUCACCUGAUUAAACUAACCCCAUCACUCUUCUGCCUGCGUGUGUGCUGUGCAAAGCCGGCUAUAAAAUCACUUGCAACUCCAGUGCGAGAGCCCUUGGGCGACCAGAGAGGGAGAGGUUCCGGCCUGCUACCUCCUGGUCUCCUCUCUUCUAUCCAAGUUUGAGAAGGCCAGAGAUAUAUGCAUGCUUGCUUGUAUCAUGUGAGUUCAUGCGCAAGCAUGGAUAUCUAGCUCUAUUACUGCAUGCAUUGGUGUUAAUUAGUAGGUGCAUGCAUGGCAUCCUCGUCAAUCCUGAUUGAUGUUUUGAACAACUGGUUAUGUCUUUCACUUCAUGCACGCGUGCGCAAAUGAUGUAUAUAGGUUUCAGGAGAUGAAGUGCUCACUACUGCUCGGGCAGGUAGCUAGCAGUGUCGGCUGGAGCCAUGUACAUUGCUGAUAGAGGCCGGCGAGCGGCAUUGUUGCCGGCUGGAGAGAGGCUGGCCUUCACGCGGUGAACCAAGCUAGGAUAGAAGAACAAAAAAUGGGUCAUGUGGCAAGCAGCUUCUGUUUAUUUAUUUUUCGUUUGUUCAUGCUGUUUGAUUGUUCUCUACUUAAUUUGUACGGUUGUACCCAGCUCCUUACGUAGUUGCAGGCAUUAACUACGUACUCUGCGGUGUUGAAAUCUAUGGAACUUCGUUUACGAGCCGAGCUUCAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.46%
ME_num:
MEP:
24.19%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.92
Avg Expression:
51.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 6.29561199419655 | 2.03423893112376e-169 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.45962117642931 | 1.03648267463943e-117 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.67144118768342 | 4.12340953201735e-81 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.31489020255097 | 0.000305450423821604 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.60223865287787 | 4.2576525604293e-31 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.03021623485608 | 0.000481470385756041 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.5726028149519 | 2.71163678954571e-79 |
| 8 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 2.50908469859522 | 0.00163521099252823 |
| 9 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.85011575443235 | 0.0152913807482329 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.65494223214587 | 0.000514491717971936 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.65613918400156 | 8.14165286702567e-189 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.95434765988726 | 1.34862805603845e-14 |