RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC107276740

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

14706973

End:

14708026

Strand:

-

Ref_name:

LOC107276740

Sequence
(XR_001544421.2):

UCGAUCUAAAUCCGCUUCGCUUGUAGCGGUAGGCUCCCAAAAGUAUUUCCUCCCCGCCGUUCCCCUCUACGAUACCGCCGCCGCCAGCCGCCUCUCUCAUCCGGAACCCGUCUGCCGCUGCUACCCUCUUCUACGCGUGGGAGGGCGCCGUGCCGCUGUCUGCCUGCUGGCCGCCCCUCCUCGUCCAACUGCCCGAGGUAACUGCCGCCGCUUUCUUCCUCCACGGCACCACCUGGGUAGCCGGCGCCGCCCACAGCCGCUGACAUAUUCCUCCUCACGCAAGAGGGCCACUGAUGUGGUGCUGUCGUCCGUCGUGACUCGUGAAGGGGAGACAGACAUAAGGGGUGAAGCUUGGCUGAUGAUUCAACAUUAGAAGACUGCAAUGAACAAGAGGCCACUUAAGAAAUGCCAUAGAACAAUCAACGACAGAAAAAUAUGGACUGAAGGAAAUUAUUCUGGGAGCUGAUGUGUGAAAGUAGUUAGUUUUGCCUCAUGUCUGUAGCCUUUCUUUGUAAGAUGCACUAAAGUAGCUGGGUAGUCUGUAUAUAGUUAAGAGUUUGCAGGGACAGUAGUCAUAGAUGCUACAAAUUUGAACCCCCUUUUGGUUCAAAUAGCAAAGAAACUCAUAUCUGUACAAUAUAUUUCUUUUAUCACCUGGCGUGUUGGAUGUUAUGAAAUCUGCAAAGUGAUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

241

LEP:

48.98%

ME_num:

246

MEP:

50.0%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.70

Avg Expression:

2.89

Tip: OSA-LNC107276740 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"1.318998746203070.018083161181793