Chr:
Chr11
Start:
569660
End:
580955
Strand:
-
Ref_name:
LOC107276729
Sequence
(XR_001541361.2):
GCAAAAACAGAGUCGCGUGCUGCCACAGCAAGGAUGUCAGCACAUGACACCACCUGCGGACAGAUCCCCUCAACCUGUGCCUUGAUGUUGUCUAUAACAUCGAAUCCACGCAGAGAGUUGUUGUUCGGGGCGGCGGUCUUCUCUCCAGUGAAGGUUGGGGUGUCAUCUAGCAGCACCGAUCCAUCACAACCCUGCAUUGUCAGAAUACUGAAGGCUAAUUAAUGGAAAACUCUACAGUCAGAAAGUGCAUGCAAGUGGAGAGGAUCAGAUGGGGGCAUGCCAACAUGACAAGAUACCCUUUGUGGUUUGGUCUUUUGAUCCCUCCACUAAGAUGUAACCAUCUAGAAGAAUUACUGAAGAACCAAAUGGAUAGCUCCAAAACUCGAGAAUAUGGUGGUAUCUUUCACAAGCCGCAUCCAAGGACUAGUGACUCGGAAAAUUGUGCUCAAUCCUUGCAUAGAUGGUGCUUGCCAGCCAAUUGAUGUAUGUUGACUCGACUGCAUGUAUACACUGAAGUAAGAUGGAUAGAGUGGGAGCAGUUGGGCUGGUGGUGAGUGGUGAGCACAAGCACAAACCAAAAGCACAGCAGAGCAAAGCAAAGGAAAUGGCCGCCAUCUCUUUCAAAGAAUAUUCAGUGCCUUAUUGUAUUUGCAGCAGCAAAGCCACUCACUACUUAUUUUAAUUAUCUUGGAUUCUGCAAAGAAACAAGAUUUUGACGAA
Sequence
(XR_003239381.1):
AUGUGAAUGGAUAUUUAUAGGUCGAAUUCAGUGCACAUGCUCAAUUGGUCAUAUGUAUAUUGUUGUGGCUUUGUAAUUCUUUGCAUUUUGUUAGUUGAUCUUCCUUUUUUUUGUAUCAGGCUAAUUAAUGGAAAACUCUACAGUCAGAAAGUGCAUGCAAGUGGAGAGGAUCAGAUGGGGGCAUGCCAACAUGACAAGAUACCCUUUGUGGUUUGGUCUUUUGAUCCCUCCACUAAGAUGUAACCAUCUAGAAGAAUUACUGAAGAACCAAAUGGAUAGCUCCAAAACUCGAGAAUAUGGUGGUAUCUUUCACAAGCCGCAUCCAAGGACUAGUGACUCGGAAAAUUGUGCUCAAUCCUUGCAUAGAUGGUGCUUGCCAGCCAAUUGAUGUAUGUUGACUCGACUGCAUGUAUACACUGAAGUAAGAUGGAUAGAGUGGGAGCAGUUGGGCUGGUGGUGAGUGGUGAGCACAAGCACAAACCAAAAGCACAGCAGAGCAAAGCAAAGGAAAUGGCCGCCAUCUCUUUCAAAGAAUAUUCAGUGCCUUAUUGUAUUUGCAGCAGCAAAGCCACUCACUACUUAUUUUAAUUAUCUUGGAUUCUGCAAAGAAACAAGAUUUUGACGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.53%
ME_num:
MEP:
77.24%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.74
Avg Expression:
4.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.9401627571117 | 4.89191741647082e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.50734930396845 | 0.000302434530145785 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.87894453629294 | 1.11760614875885e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.1408797191307 | 0.000413240688673947 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.90142884043003 | 0.000214706152595438 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.96565718979075 | 9.47461994235757e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.01098063806257 | 0.0310525950825515 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.47446468615861 | 0.000176586706010292 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.15018602866727 | 1.06332064988733e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.17497911457139 | 1.42224865877615e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.85385895650725 | 0.000290267465609895 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.66029682452361 | 3.08186487277789e-10 |