| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 2.38 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 0.65 | MC |
| SRR8258050 | leaf_sheath | R_bph | 1.50 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 1.27 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 1.83 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 1.82 | MC |
| SRR7058097 | leaf | rice_mock | 1.33 | MC |
| SRR7058098 | leaf | rice_RSV | 0.82 | MC |
| SRR2154076 | seedling | Guangluai4_seedling | 1.38 | MC |
| SRR2154070 | seed | Guangluai4_seed | 4.27 | MC |
| SRR2154071 | seed | KDM105_seed | 1.01 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 0.31 | MC |
| SRR1061625 | panicle | Heat Stress | 0.32 | MC |
| SRR1061624 | panicle | Normal | 0.40 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.41 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.91 | MC |
| SRR1013784 | flag_leaf | PA64s_FL | 1.57 | MC |
| SRR1013787 | panicle | PA64s_PA | 0.81 | MC |
| SRR1013786 | flag_leaf | 93-11_FL | 0.35 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 0.26 | MC |
| SRR9070101 | shoot_base | WT_base | 0.95 | MC |
| SRR089619 | panicle | control | 0.44 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 0.46 | MC |
| SRR1849765 | leaf | Control 30min | 0.90 | MC |
| SRR6498701 | leaf | "WT, Control" | 2.33 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1.21 | MC |
| SRR3203907 | leaf | WT | 2.45 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 1.34 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.64 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.73 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.08 | MC |
| SRR447129 | root | As(III) 80 uM | 0.48 | MC |
| SRR1849771 | leaf | Control 120min | 0.98 | MC |
| SRR7058096 | leaf | rice_mock | 1.05 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 1.68 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 0.51 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 1.99 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.99 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 1.09 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 0.68 | MC |
| SRR976171 | lamina_joint | wild type | 2.23 | MC |
| SRR4098208 | root | No treatment | 0.27 | MC |
| SRR4098209 | leaf | No treatment | 1.86 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.05 | MC |
| SRR9070100 | shoot_base | WT_base | 1.24 | MC |
| SRR4098205 | seedling | Heat (50C) | 0.61 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.72 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.39 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.81 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1.80 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.68 | MC |
| SRR2862364 | leaf | mock leaf cells | 2.62 | MC |
| SRR2862365 | leaf | mock leaf cells | 3.42 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 3.20 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 1.00 | MC |
| SRR2862363 | leaf | mock leaf cells | 3.47 | MC |
| SRR8649147 | panicle | panicle tissue | 0.56 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.54 | MC |
| SRR9070102 | shoot_base | WT_base | 0.55 | MC |
| SRR6498699 | leaf | "WT, Control" | 1.43 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.90 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.50 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.06 | MC |
| SRR4098203 | seedling | No treatment | 0.85 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.26 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 0.80 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 1.04 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 1.07 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 4.43 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 1.53 | MC |
| SRR3110556 | shoot | shoot control | 2.20 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 1.08 | MC |
| SRR1061612 | panicle | Normal | 0.20 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 1.01 | MC |
| SRR1061618 | flag_leaf | Normal | 0.56 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 0.33 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.01 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 0.94 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 0.46 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 2.69 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.62 | MC |
| SRR089621 | panicle | cold | 0.80 | MC |
| SRR089622 | panicle | salt | 0.54 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 1.96 | MC |
| SRR2544786 | embryo | dry seed | 1.98 | MC |
| SRR4098172 | seedling | Cold (4C) | 0.72 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.80 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 1.13 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 2.70 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 2.10 | MC |
| SRR8258048 | leaf_sheath | R_bph | 2.82 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 1.00 | MC |
| SRR1740024 | seedling | N22-Control | 1.90 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 1.37 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 1.60 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.87 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.98 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 2.91 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.20 | MC |
| SRR1654490 | leaf | wild type | 2.32 | MC |
| SRR3110557 | shoot | shoot treated | 2.27 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.65 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 0.40 | MC |
| SRR8258051 | leaf_sheath | R_bph | 1.30 | MC |