| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 15.80 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 6.39 | MC |
| SRR8258050 | leaf_sheath | R_bph | 25.16 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 4.94 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 21.47 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 19.95 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.48 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 0.54 | MC |
| SRR2154074 | seed | Nipponbare_seed | 2.32 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 0.45 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 2.31 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 4.09 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 1.05 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.57 | MC |
| SRR504363 | leaf | 93-11 X NPB | 0.95 | MC |
| SRR447135 | shoot | As(III) 20 uM | 0.72 | MC |
| SRR447134 | shoot | As(III) 80 uM | 0.60 | MC |
| SRR447133 | shoot | As(III) 20 uM | 0.46 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 0.69 | MC |
| SRR1849765 | leaf | Control 30min | 2.70 | MC |
| SRR1849767 | leaf | Control 30min | 3.17 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 5.42 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 2.90 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 13.78 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 2.34 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 2.49 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 0.76 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 1.23 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.28 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 0.98 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 1.08 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 1.09 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 0.54 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 1.34 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 4.76 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 2.88 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.34 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.66 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 2.29 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 6.29 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 5.85 | MC |
| SRR1849773 | leaf | Control 120min | 10.98 | MC |
| SRR1849772 | leaf | Control 120min | 4.27 | MC |
| SRR1849771 | leaf | Control 120min | 5.43 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 6.86 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 4.41 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2.22 | MC |
| SRR447136 | shoot | As(III) 80 uM | 1.32 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.59 | MC |
| SRR2154075 | seed | Taipei309_seed | 1.52 | MC |
| SRR4098208 | root | No treatment | 7.89 | MC |
| SRR4098209 | leaf | No treatment | 11.09 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.89 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.29 | MC |
| SRR4098205 | seedling | Heat (50C) | 7.33 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1.97 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.50 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.17 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 2.45 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.93 | MC |
| SRR2862364 | leaf | mock leaf cells | 16.76 | MC |
| SRR2862365 | leaf | mock leaf cells | 14.53 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 2.97 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 10.24 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 7.59 | MC |
| SRR2862363 | leaf | mock leaf cells | 3.81 | MC |
| SRR8649147 | panicle | panicle tissue | 0.80 | MC |
| SRR4098207 | panicle | No treatment | 5.53 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 4.54 | MC |
| SRR9070102 | shoot_base | WT_base | 3.57 | MC |
| SRR2154079 | seedling | Heukgyeong_seedling | 7.86 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.41 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 2.10 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.32 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 2.58 | MC |
| SRR4098203 | seedling | No treatment | 4.83 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 1.56 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 3.18 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 11.10 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 15.59 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 0.44 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 27.04 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 18.71 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 0.63 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.63 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 1.21 | MC |
| SRR1849784 | root | Control 120min | 1.57 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.53 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 0.46 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 0.96 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 0.29 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 0.61 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.28 | MC |
| SRR3110556 | shoot | shoot control | 6.42 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 4.00 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2.41 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 9.08 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.47 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 7.85 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.22 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 11.89 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 12.50 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 10.19 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 2.05 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.61 | MC |
| SRR504360 | leaf | Nipponbare | 1.28 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 1.65 | MC |
| SRR2544786 | embryo | dry seed | 0.77 | MC |
| SRR4098172 | seedling | Cold (4C) | 3.83 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.59 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 16.41 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 27.70 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 1.28 | MC |
| SRR8258048 | leaf_sheath | R_bph | 34.94 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 6.36 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.72 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.62 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 26.11 | MC |
| SRR1654490 | leaf | wild type | 0.48 | MC |
| SRR3110557 | shoot | shoot treated | 14.25 | MC |
| SRR5940086 | panicle | Wild type | 2.21 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.37 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 0.96 | MC |
| SRR504362 | leaf | NPB X 93-11 | 1.16 | MC |