| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 0.49 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 2.22 | MC |
| SRR7058097 | leaf | rice_mock | 7.33 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 5.69 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.14 | MC |
| SRR7058098 | leaf | rice_RSV | 7.68 | MC |
| SRR2154076 | seedling | Guangluai4_seedling | 0.64 | MC |
| SRR2154074 | seed | Nipponbare_seed | 2.07 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 1.89 | MC |
| SRR2154070 | seed | Guangluai4_seed | 1.11 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 0.58 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.41 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 0.50 | MC |
| SRR1061620 | flag_leaf | Normal | 1.40 | MC |
| SRR10704058 | leaf | Glyphosate | 0.59 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.70 | MC |
| SRR1013785 | flag_leaf | LYP9_FL | 1.12 | MC |
| SRR1013786 | flag_leaf | 93-11_FL | 1.72 | MC |
| SRR504363 | leaf | 93-11 X NPB | 1.67 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 4.28 | MC |
| SRR1013789 | panicle | 93-11_PA | 1.62 | MC |
| SRR1013788 | panicle | LYP9_PA | 1.11 | MC |
| SRR9070101 | shoot_base | WT_base | 0.13 | MC |
| SRR089619 | panicle | control | 1.12 | MC |
| SRR1849767 | leaf | Control 30min | 0.91 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 1.21 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.88 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 3.43 | MC |
| SRR6498701 | leaf | "WT, Control" | 3.49 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 4.81 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 14.01 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 2.06 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 0.34 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 0.34 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 0.20 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 0.24 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 6.20 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.23 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.52 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.26 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 0.76 | MC |
| SRR1849773 | leaf | Control 120min | 1.65 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 0.29 | MC |
| SRR3130370 | leaf | control 8 hour | 0.95 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 0.53 | MC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 0.36 | MC |
| SRR7058096 | leaf | rice_mock | 6.51 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.08 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 1.13 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 1.41 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.66 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 1.86 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 0.71 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 1.57 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.43 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 2.10 | MC |
| SRR2154075 | seed | Taipei309_seed | 3.19 | MC |
| SRR976171 | lamina_joint | wild type | 0.41 | MC |
| SRR4098208 | root | No treatment | 3.94 | MC |
| SRR4098209 | leaf | No treatment | 1.23 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 0.72 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.61 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.14 | MC |
| SRR9070100 | shoot_base | WT_base | 0.35 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.73 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.76 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.99 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1.31 | MC |
| SRR3130365 | leaf | control 0 hour | 0.44 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2.05 | MC |
| SRR3130366 | leaf | control 0 hour | 0.80 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 0.30 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.19 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 0.21 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 0.41 | MC |
| SRR2862364 | leaf | mock leaf cells | 2.79 | MC |
| SRR2862365 | leaf | mock leaf cells | 5.06 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 8.28 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 3.80 | MC |
| SRR2862363 | leaf | mock leaf cells | 6.58 | MC |
| SRR8649147 | panicle | panicle tissue | 1.49 | MC |
| SRR4098207 | panicle | No treatment | 1.22 | MC |
| SRR10704057 | leaf | CK | 0.46 | MC |
| SRR10704056 | leaf | CK | 0.40 | MC |
| SRR10704059 | leaf | Glyphosate | 2.23 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.42 | MC |
| SRR9070102 | shoot_base | WT_base | 0.38 | MC |
| SRR6498699 | leaf | "WT, Control" | 1.56 | MC |
| SRR2154079 | seedling | Heukgyeong_seedling | 0.70 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.50 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.19 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 0.50 | MC |
| SRR4098203 | seedling | No treatment | 0.99 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 0.30 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 0.54 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 0.60 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 0.77 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 0.36 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.26 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 0.37 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 0.29 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.23 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 2.03 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.54 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 5.07 | MC |
| SRR1061617 | panicle | Heat Stress | 0.31 | MC |
| SRR1061614 | panicle | Normal | 0.21 | MC |
| SRR1061615 | panicle | Heat Stress | 0.22 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.90 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 0.82 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.73 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 0.60 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 0.88 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.62 | MC |
| SRR089621 | panicle | cold | 0.40 | MC |
| SRR089620 | panicle | drought | 0.94 | MC |
| SRR089622 | panicle | salt | 0.54 | MC |
| SRR504360 | leaf | Nipponbare | 3.07 | MC |
| SRR504361 | leaf | Nov-93 | 3.29 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 0.87 | MC |
| SRR2544786 | embryo | dry seed | 0.43 | MC |
| SRR4098172 | seedling | Cold (4C) | 0.36 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.75 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 0.56 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 4.69 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 2.10 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 0.33 | MC |
| SRR8258048 | leaf_sheath | R_bph | 0.97 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 0.61 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 2.34 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 1.91 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.15 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.38 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.50 | MC |
| SRR1654490 | leaf | wild type | 2.43 | MC |
| SRR3110557 | shoot | shoot treated | 2.27 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 1.12 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 1.56 | MC |
| SRR8258051 | leaf_sheath | R_bph | 0.70 | MC |
| SRR504362 | leaf | NPB X 93-11 | 3.21 | MC |