| SRR3140955 | leaf | "45C, 12h" | 3.21 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 6.37 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 0.91 | MC |
| SRR10690152 | leaf | IRBB5_0h | 3.05 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 1.50 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 2.51 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 0.41 | MC |
| SRR2154076 | seedling | Guangluai4_seedling | 0.64 | MC |
| SRR2154077 | seedling | KDM105_seedling | 0.72 | MC |
| SRR2154074 | seed | Nipponbare_seed | 0.33 | MC |
| SRR10690151 | leaf | IRBB5_0h | 2.89 | MC |
| SRR2154072 | seed | Rathuwee_seed | 1.99 | MC |
| SRR2154070 | seed | Guangluai4_seed | 1.86 | MC |
| SRR2154071 | seed | KDM105_seed | 3.42 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 0.57 | MC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 7.05 | MC |
| SRR1061625 | panicle | Heat Stress | 0.73 | MC |
| SRR1061624 | panicle | Normal | 2.01 | MC |
| SRR1061622 | flag_leaf | Normal | 5.58 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 3.37 | MC |
| SRR1061620 | flag_leaf | Normal | 3.92 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 4.93 | MC |
| SRR447128 | root | As(III) 20 uM | 3.64 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 4.07 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 0.90 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 4.97 | MC |
| SRR1013785 | flag_leaf | LYP9_FL | 0.40 | MC |
| SRR1013786 | flag_leaf | 93-11_FL | 0.36 | MC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 5.55 | MC |
| SRR1013789 | panicle | 93-11_PA | 0.55 | MC |
| SRR426799 | leaf | mock-treated susceptible rice line | 2.09 | MC |
| SRR089619 | panicle | control | 5.15 | MC |
| SRR447135 | shoot | As(III) 20 uM | 0.36 | MC |
| SRR447134 | shoot | As(III) 80 uM | 0.80 | MC |
| SRR447131 | root | As(III) 80 uM | 2.50 | MC |
| SRR447130 | root | As(III) 20 uM | 8.34 | MC |
| SRR1849765 | leaf | Control 30min | 1.80 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 3.61 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 3.08 | MC |
| SRR6498701 | leaf | "WT, Control" | 1.55 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1.96 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 5.34 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 4.61 | MC |
| SRR3203907 | leaf | WT | 0.69 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 2.50 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 4.85 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 2.66 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 3.09 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 4.55 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 1.71 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 2.19 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 4.53 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 3.76 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 2.35 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 6.29 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 2.07 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 3.15 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 5.20 | MC |
| SRR447129 | root | As(III) 80 uM | 0.48 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 2.29 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 1.26 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 1.06 | MC |
| SRR1849773 | leaf | Control 120min | 2.75 | MC |
| SRR1849772 | leaf | Control 120min | 3.05 | MC |
| SRR1849771 | leaf | Control 120min | 1.48 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 1.59 | MC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 3.97 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 2.27 | MC |
| SRR3130370 | leaf | control 8 hour | 4.84 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 3.48 | MC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 3.02 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 3.28 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 16.01 | MC |
| SRR6365689 | seedling | Wild type | 1.11 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 6.45 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 14.48 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 3.16 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 6.03 | MC |
| SRR976171 | lamina_joint | wild type | 3.87 | MC |
| SRR4098208 | root | No treatment | 0.99 | MC |
| SRR3130369 | leaf | control 8 hour | 3.61 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 3.65 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 3.24 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 4.87 | MC |
| SRR4098205 | seedling | Heat (50C) | 1.45 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 8.32 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 4.25 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 3.65 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 2.79 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 4.26 | MC |
| SRR3130365 | leaf | control 0 hour | 7.18 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 4.54 | MC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 2.96 | MC |
| SRR3130366 | leaf | control 0 hour | 3.49 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 2.64 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 1.31 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 1.00 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 4.06 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 1.33 | MC |
| SRR4098207 | panicle | No treatment | 0.27 | MC |
| SRR10704055 | leaf | CK | 0.72 | MC |
| SRR10704057 | leaf | CK | 0.55 | MC |
| SRR10704056 | leaf | CK | 0.40 | MC |
| SRR10704059 | leaf | Glyphosate | 2.06 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 4.45 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 2.96 | MC |
| SRR6498699 | leaf | "WT, Control" | 2.27 | MC |
| SRR2154078 | seedling | Rathuwee_seedling | 0.48 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 4.83 | MC |
| SRR2646852 | panicle | FP | 0.97 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.86 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 2.39 | MC |
| SRR2646854 | panicle | SP | 0.41 | MC |
| SRR2646855 | panicle | SP | 0.42 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 4.46 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 1.00 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 4.26 | MC |
| SRR4098203 | seedling | No treatment | 0.72 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 2.19 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 7.58 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 1.82 | MC |
| SRR6365690 | seedling | Wild type | 1.05 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 5.77 | MC |
| SRR6365692 | panicle | Wild type | 1.23 | MC |
| SRR6365693 | panicle | Wild type | 2.15 | MC |
| SRR6365694 | panicle | Wild type | 1.09 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 0.50 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 3.13 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 1.07 | MC |
| SRR6810101 | seedling | seedling | 5.24 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 0.99 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 2.66 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 0.63 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 1.39 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 0.16 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 1.21 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 4.89 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 5.27 | MC |
| SRR1849784 | root | Control 120min | 1.56 | MC |
| SRR6365691 | panicle | Wild type | 3.05 | MC |
| SRR10690153 | leaf | IRBB5_0h | 0.85 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 4.62 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 7.99 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 3.45 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 4.41 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 2.62 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 2.10 | MC |
| SRR3110556 | shoot | shoot control | 0.56 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 1.87 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 5.46 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 4.42 | MC |
| SRR1061617 | panicle | Heat Stress | 2.06 | MC |
| SRR1061615 | panicle | Heat Stress | 1.99 | MC |
| SRR1061612 | panicle | Normal | 2.34 | MC |
| SRR1061613 | panicle | Heat Stress | 1.86 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 1.52 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 8.07 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 1.46 | MC |
| SRR6810103 | flag_leaf | flag_leaf | 6.05 | MC |
| SRR1061618 | flag_leaf | Normal | 1.70 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 1.15 | MC |
| SRR9937395 | spikelet | sRNA basal spikelets | 11.60 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 5.89 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 3.99 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 0.45 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 2.15 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 6.59 | MC |
| SRR089621 | panicle | cold | 1.80 | MC |
| SRR089620 | panicle | drought | 3.61 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 1.91 | MC |
| SRR2544786 | embryo | dry seed | 0.93 | MC |
| SRR4098172 | seedling | Cold (4C) | 0.48 | MC |
| SRR3140956 | leaf | "45C, 24h" | 10.98 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 5.72 | MC |
| SRR6810102 | seedling | seedling | 8.48 | MC |
| SRR10956502 | panicle | WT | 4.15 | MC |
| SRR10956501 | panicle | WT | 2.43 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 1.10 | MC |
| SRR8258048 | leaf_sheath | R_bph | 1.19 | MC |
| SRR1740023 | seedling | IR64-Control | 1.50 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 18.53 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 16.45 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 5.94 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.86 | MC |
| SRR5940086 | panicle | Wild type | 0.91 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.61 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 1.16 | MC |
| SRR8258051 | leaf_sheath | R_bph | 0.90 | MC |