| SRR3140955 | leaf | "45C, 12h" | 1.41 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 3.47 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 72.50 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 30.09 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 19.43 | MC |
| SRR10690152 | leaf | IRBB5_0h | 0.36 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.19 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 8.98 | MC |
| SRR2154076 | seedling | Guangluai4_seedling | 7.15 | MC |
| SRR2154077 | seedling | KDM105_seedling | 14.07 | MC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3.43 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 6.85 | MC |
| SRR1061622 | flag_leaf | Normal | 0.54 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 2.59 | MC |
| SRR1061620 | flag_leaf | Normal | 2.17 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2.89 | MC |
| SRR10704058 | leaf | Glyphosate | 21.77 | MC |
| SRR447128 | root | As(III) 20 uM | 1.91 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.81 | MC |
| SRR1013786 | flag_leaf | 93-11_FL | 1.58 | MC |
| SRR504363 | leaf | 93-11 X NPB | 14.53 | MC |
| SRR426799 | leaf | mock-treated susceptible rice line | 18.32 | MC |
| SRR089619 | panicle | control | 1.79 | MC |
| SRR447135 | shoot | As(III) 20 uM | 2.72 | MC |
| SRR447134 | shoot | As(III) 80 uM | 1.20 | MC |
| SRR447133 | shoot | As(III) 20 uM | 1.16 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 0.46 | MC |
| SRR447131 | root | As(III) 80 uM | 3.34 | MC |
| SRR447130 | root | As(III) 20 uM | 1.74 | MC |
| SRR1849765 | leaf | Control 30min | 16.67 | MC |
| SRR1849767 | leaf | Control 30min | 10.43 | MC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 3.82 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 12.67 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 1.01 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 21.91 | MC |
| SRR6498701 | leaf | "WT, Control" | 18.22 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 18.15 | MC |
| SRR3203907 | leaf | WT | 6.25 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 19.88 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 1.03 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 1.27 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.56 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 2.45 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 5.60 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 3.86 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 3.84 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 9.15 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 11.14 | MC |
| SRR447129 | root | As(III) 80 uM | 1.20 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 3.05 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 15.72 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 20.76 | MC |
| SRR1849773 | leaf | Control 120min | 12.08 | MC |
| SRR1849772 | leaf | Control 120min | 7.93 | MC |
| SRR1849771 | leaf | Control 120min | 15.31 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 11.60 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 2.43 | MC |
| SRR3130370 | leaf | control 8 hour | 11.75 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 8.83 | MC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 6.27 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 0.19 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 4.39 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 4.52 | MC |
| SRR6365689 | seedling | Wild type | 1.38 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 2.64 | MC |
| SRR10704060 | leaf | Glyphosate | 28.95 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 4.57 | MC |
| SRR3140952 | leaf | "45C, 0h" | 6.59 | MC |
| SRR4098209 | leaf | No treatment | 0.48 | MC |
| SRR3130369 | leaf | control 8 hour | 8.49 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 7.89 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 3.33 | MC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 7.18 | MC |
| SRR3130366 | leaf | control 0 hour | 14.25 | MC |
| SRR2862364 | leaf | mock leaf cells | 1.81 | MC |
| SRR2862365 | leaf | mock leaf cells | 1.46 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 3.52 | MC |
| SRR2862363 | leaf | mock leaf cells | 41.20 | MC |
| SRR4098207 | panicle | No treatment | 5.93 | MC |
| SRR10704059 | leaf | Glyphosate | 7.14 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 1.48 | MC |
| SRR6498699 | leaf | "WT, Control" | 11.10 | MC |
| SRR2154078 | seedling | Rathuwee_seedling | 7.57 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 14.85 | MC |
| SRR10690144 | leaf | IR24_0h | 4.11 | MC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 16.16 | MC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 9.53 | MC |
| SRR10690143 | leaf | IR24_0h | 2.55 | MC |
| SRR10690142 | leaf | IR24_0h | 2.45 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 7.56 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 7.37 | MC |
| SRR6365690 | seedling | Wild type | 1.05 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 0.30 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 1.98 | MC |
| SRR6810101 | seedling | seedling | 8.16 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 0.76 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 0.30 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.23 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.55 | MC |
| SRR1849784 | root | Control 120min | 4.72 | MC |
| SRR10690153 | leaf | IRBB5_0h | 0.66 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 0.32 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 1.04 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 1.36 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.47 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 5.04 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 4.09 | MC |
| SRR3110556 | shoot | shoot control | 2.32 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 10.60 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 20.92 | MC |
| SRR6810103 | flag_leaf | flag_leaf | 5.09 | MC |
| SRR1061618 | flag_leaf | Normal | 1.25 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 0.46 | MC |
| SRR9937394 | spikelet | sRNA apical spikelets | 0.41 | MC |
| SRR447127 | root | control for As(III) 20/80 uM | 2.19 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 25.91 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 1.03 | MC |
| SRR3140954 | leaf | "45C, 12h" | 11.62 | MC |
| SRR089621 | panicle | cold | 4.21 | MC |
| SRR089620 | panicle | drought | 4.38 | MC |
| SRR3140957 | leaf | "45C, 24h" | 5.71 | MC |
| SRR089622 | panicle | salt | 3.57 | MC |
| SRR504360 | leaf | Nipponbare | 5.12 | MC |
| SRR504361 | leaf | Nov-93 | 4.62 | MC |
| SRR2544786 | embryo | dry seed | 0.19 | MC |
| SRR3140956 | leaf | "45C, 24h" | 10.01 | MC |
| SRR3140953 | leaf | "45C, 0h" | 4.75 | MC |
| SRR6810102 | seedling | seedling | 6.92 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 2.13 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 3.21 | MC |
| SRR1740023 | seedling | IR64-Control | 4.34 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 8.20 | MC |
| SRR1740025 | seedling | PK-Control | 4.99 | MC |
| SRR1740024 | seedling | N22-Control | 1.92 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 3.30 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 3.07 | MC |
| SRR1654490 | leaf | wild type | 1.50 | MC |
| SRR3110557 | shoot | shoot treated | 4.92 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.20 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 0.44 | MC |
| SRR504362 | leaf | NPB X 93-11 | 5.55 | MC |