| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 12.72 | MC |
| SRR3140955 | leaf | "45C, 12h" | 0.20 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 18.16 | MC |
| SRR8258050 | leaf_sheath | R_bph | 18.71 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 14.07 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 9.61 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 8.84 | MC |
| SRR6810106 | panicle | panicle | 1.53 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 0.20 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.37 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 0.82 | MC |
| SRR2154077 | seedling | KDM105_seedling | 0.72 | MC |
| SRR2154074 | seed | Nipponbare_seed | 0.21 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 0.27 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 1.59 | MC |
| SRR1061625 | panicle | Heat Stress | 3.67 | MC |
| SRR1061624 | panicle | Normal | 8.99 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 14.54 | MC |
| SRR10704058 | leaf | Glyphosate | 8.83 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 0.45 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.17 | MC |
| SRR1013785 | flag_leaf | LYP9_FL | 1.68 | MC |
| SRR1013784 | flag_leaf | PA64s_FL | 4.21 | MC |
| SRR9070101 | shoot_base | WT_base | 1.84 | MC |
| SRR426799 | leaf | mock-treated susceptible rice line | 2.53 | MC |
| SRR6810105 | panicle | panicle | 1.70 | MC |
| SRR089619 | panicle | control | 1.66 | MC |
| SRR447135 | shoot | As(III) 20 uM | 1.44 | MC |
| SRR447133 | shoot | As(III) 20 uM | 0.46 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 1.15 | MC |
| SRR447131 | root | As(III) 80 uM | 0.34 | MC |
| SRR1849765 | leaf | Control 30min | 13.06 | MC |
| SRR1849767 | leaf | Control 30min | 14.95 | MC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 1.91 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 13.86 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 7.62 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 1.00 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 2.12 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 0.81 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 1.74 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 4.48 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 3.14 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 6.17 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 2.19 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 2.80 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 3.06 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 3.06 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 16.35 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 14.90 | MC |
| SRR1849773 | leaf | Control 120min | 21.41 | MC |
| SRR1849772 | leaf | Control 120min | 19.54 | MC |
| SRR1849771 | leaf | Control 120min | 12.35 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 15.83 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.16 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 0.19 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 1.38 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 0.65 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2.22 | MC |
| SRR6365689 | seedling | Wild type | 4.16 | MC |
| SRR447136 | shoot | As(III) 80 uM | 1.05 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.15 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 1.14 | MC |
| SRR10704060 | leaf | Glyphosate | 11.10 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 0.39 | MC |
| SRR3140952 | leaf | "45C, 0h" | 0.77 | MC |
| SRR976171 | lamina_joint | wild type | 9.48 | MC |
| SRR4098209 | leaf | No treatment | 3.32 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.35 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.54 | MC |
| SRR9070100 | shoot_base | WT_base | 2.95 | MC |
| SRR4098205 | seedling | Heat (50C) | 2.66 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.93 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.65 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.62 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 3.93 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.48 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 0.30 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.83 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 0.23 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 0.28 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 0.47 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 0.30 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 0.61 | MC |
| SRR2862364 | leaf | mock leaf cells | 0.98 | MC |
| SRR2862365 | leaf | mock leaf cells | 1.13 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 2.31 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 1.92 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 2.13 | MC |
| SRR2862363 | leaf | mock leaf cells | 6.25 | MC |
| SRR8649147 | panicle | panicle tissue | 1.18 | MC |
| SRR4098207 | panicle | No treatment | 1.02 | MC |
| SRR10704055 | leaf | CK | 5.96 | MC |
| SRR10704057 | leaf | CK | 10.66 | MC |
| SRR10704056 | leaf | CK | 5.39 | MC |
| SRR10704059 | leaf | Glyphosate | 3.76 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.85 | MC |
| SRR9070102 | shoot_base | WT_base | 1.56 | MC |
| SRR2154078 | seedling | Rathuwee_seedling | 0.72 | MC |
| SRR2154079 | seedling | Heukgyeong_seedling | 1.94 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 2.51 | MC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 31.04 | MC |
| SRR2646852 | panicle | FP | 1.38 | MC |
| SRR2646853 | panicle | FP | 1.78 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 2.60 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.46 | MC |
| SRR2646854 | panicle | SP | 2.34 | MC |
| SRR2646855 | panicle | SP | 3.11 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 0.70 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 0.57 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 0.89 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 0.50 | MC |
| SRR4098203 | seedling | No treatment | 2.60 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 0.70 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 0.44 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.39 | MC |
| SRR6365690 | seedling | Wild type | 5.28 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 0.30 | MC |
| SRR6365692 | panicle | Wild type | 3.27 | MC |
| SRR6365693 | panicle | Wild type | 4.97 | MC |
| SRR6365694 | panicle | Wild type | 4.37 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 0.52 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 1.38 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 9.34 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 7.51 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 0.55 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 0.61 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 7.08 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 14.10 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 0.88 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 1.37 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 4.94 | MC |
| SRR6365691 | panicle | Wild type | 3.93 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 0.95 | MC |
| SRR10690153 | leaf | IRBB5_0h | 20.84 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 1.02 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 2.03 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 1.31 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 4.56 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 2.19 | MC |
| SRR3110556 | shoot | shoot control | 18.07 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 0.85 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.61 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 1.07 | MC |
| SRR1061617 | panicle | Heat Stress | 5.25 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 0.93 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 2.02 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 4.73 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.00 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 7.98 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 9.69 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 9.82 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.51 | MC |
| SRR3140954 | leaf | "45C, 12h" | 0.67 | MC |
| SRR089621 | panicle | cold | 2.80 | MC |
| SRR089620 | panicle | drought | 1.27 | MC |
| SRR3140957 | leaf | "45C, 24h" | 1.62 | MC |
| SRR089622 | panicle | salt | 1.08 | MC |
| SRR504360 | leaf | Nipponbare | 1.80 | MC |
| SRR2544786 | embryo | dry seed | 4.98 | MC |
| SRR4098172 | seedling | Cold (4C) | 2.04 | MC |
| SRR3140956 | leaf | "45C, 24h" | 0.68 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.76 | MC |
| SRR3140953 | leaf | "45C, 0h" | 0.61 | MC |
| SRR6810102 | seedling | seedling | 34.92 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 10.73 | MC |
| SRR10956502 | panicle | WT | 5.50 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 0.56 | MC |
| SRR10956501 | panicle | WT | 5.11 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 13.00 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 2.45 | MC |
| SRR8258048 | leaf_sheath | R_bph | 14.37 | MC |
| SRR1740023 | seedling | IR64-Control | 7.20 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 0.79 | MC |
| SRR1740025 | seedling | PK-Control | 4.32 | MC |
| SRR1740024 | seedling | N22-Control | 7.04 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 0.58 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 2.56 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 12.91 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.50 | MC |
| SRR1654490 | leaf | wild type | 1.17 | MC |
| SRR3110557 | shoot | shoot treated | 15.26 | MC |
| SRR5940086 | panicle | Wild type | 4.81 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 0.86 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 1.08 | MC |
| SRR8258051 | leaf_sheath | R_bph | 16.61 | MC |
| SRR504362 | leaf | NPB X 93-11 | 1.75 | MC |