| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 143.64 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 120.95 | HC |
| SRR8258050 | leaf_sheath | R_bph | 125.41 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 156.35 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 77.44 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 215.60 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 209.78 | HC |
| SRR6810106 | panicle | panicle | 35.37 | HC |
| SRR7058097 | leaf | rice_mock | 59.69 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 144.98 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 7.68 | HC |
| SRR7058098 | leaf | rice_RSV | 50.99 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 85.65 | HC |
| SRR2154077 | seedling | KDM105_seedling | 85.71 | HC |
| SRR2154074 | seed | Nipponbare_seed | 189.69 | HC |
| SRR2154072 | seed | Rathuwee_seed | 52.96 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 197.48 | HC |
| SRR2154070 | seed | Guangluai4_seed | 21.45 | HC |
| SRR2154071 | seed | KDM105_seed | 28.08 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 18.91 | HC |
| SRR1061625 | panicle | Heat Stress | 16.36 | HC |
| SRR1061624 | panicle | Normal | 45.50 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 405.48 | HC |
| SRR1061622 | flag_leaf | Normal | 28.96 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 19.70 | HC |
| SRR1061620 | flag_leaf | Normal | 29.29 | HC |
| SRR10704058 | leaf | Glyphosate | 60.05 | HC |
| SRR447128 | root | As(III) 20 uM | 9.86 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 47.98 | HC |
| SRR1013787 | panicle | PA64s_PA | 24.33 | HC |
| SRR504363 | leaf | 93-11 X NPB | 59.34 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 116.70 | HC |
| SRR1013789 | panicle | 93-11_PA | 33.19 | HC |
| SRR1013788 | panicle | LYP9_PA | 36.66 | HC |
| SRR9070101 | shoot_base | WT_base | 26.15 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 51.88 | HC |
| SRR6810105 | panicle | panicle | 57.55 | HC |
| SRR089619 | panicle | control | 13.66 | HC |
| SRR447135 | shoot | As(III) 20 uM | 37.16 | HC |
| SRR447133 | shoot | As(III) 20 uM | 60.42 | HC |
| SRR447131 | root | As(III) 80 uM | 17.05 | HC |
| SRR447130 | root | As(III) 20 uM | 32.31 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 45.22 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 72.48 | HC |
| SRR6498701 | leaf | "WT, Control" | 93.37 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 69.96 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 83.48 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 68.43 | HC |
| SRR3203907 | leaf | WT | 43.29 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 64.68 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 9.83 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 28.50 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 7.28 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 13.00 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 12.66 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 13.58 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 10.90 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 12.77 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 42.84 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 63.18 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 45.42 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 116.85 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 55.90 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 22.88 | HC |
| SRR3130370 | leaf | control 8 hour | 63.41 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 61.49 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 24.24 | HC |
| SRR7058096 | leaf | rice_mock | 71.25 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 32.40 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 62.70 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 83.20 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 235.22 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 34.43 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 126.89 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 30.51 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 130.84 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 194.74 | HC |
| SRR10704060 | leaf | Glyphosate | 51.86 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 156.32 | HC |
| SRR2154075 | seed | Taipei309_seed | 139.19 | HC |
| SRR3140952 | leaf | "45C, 0h" | 18.03 | HC |
| SRR4098208 | root | No treatment | 39.79 | HC |
| SRR4098209 | leaf | No treatment | 22.59 | HC |
| SRR3130369 | leaf | control 8 hour | 50.54 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 49.23 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 17.77 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 160.88 | HC |
| SRR9070100 | shoot_base | WT_base | 27.68 | HC |
| SRR4098205 | seedling | Heat (50C) | 17.18 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 25.52 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 36.38 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 46.10 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 34.08 | HC |
| SRR3130365 | leaf | control 0 hour | 57.37 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 22.28 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 37.38 | HC |
| SRR3130366 | leaf | control 0 hour | 56.76 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 7.09 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 8.23 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 7.32 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 4.66 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 8.59 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 8.47 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 37.02 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 89.15 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 25.28 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 33.31 | HC |
| SRR2862363 | leaf | mock leaf cells | 91.02 | HC |
| SRR8649147 | panicle | panicle tissue | 54.27 | HC |
| SRR10704055 | leaf | CK | 47.15 | HC |
| SRR10704057 | leaf | CK | 59.45 | HC |
| SRR10704056 | leaf | CK | 39.62 | HC |
| SRR10704059 | leaf | Glyphosate | 93.75 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 20.83 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 16.26 | HC |
| SRR9070102 | shoot_base | WT_base | 22.65 | HC |
| SRR6498699 | leaf | "WT, Control" | 79.79 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 73.73 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 99.53 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 35.61 | HC |
| SRR2646852 | panicle | FP | 141.21 | HC |
| SRR2646853 | panicle | FP | 136.64 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 117.58 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 37.63 | HC |
| SRR2646854 | panicle | SP | 331.09 | HC |
| SRR2646855 | panicle | SP | 314.75 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 76.05 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 34.28 | HC |
| SRR4098203 | seedling | No treatment | 21.53 | HC |
| SRR6365692 | panicle | Wild type | 12.66 | HC |
| SRR6365693 | panicle | Wild type | 10.75 | HC |
| SRR6365694 | panicle | Wild type | 10.30 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 44.30 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 45.99 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 8.29 | HC |
| SRR6810101 | seedling | seedling | 43.14 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 100.88 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 99.67 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 97.28 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 162.54 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 197.89 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 17.88 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 12.92 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 30.18 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 13.60 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 11.12 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 8.21 | HC |
| SRR3110556 | shoot | shoot control | 71.68 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 22.52 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 15.99 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 30.28 | HC |
| SRR1061616 | panicle | Normal | 17.69 | HC |
| SRR1061617 | panicle | Heat Stress | 10.58 | HC |
| SRR1061614 | panicle | Normal | 17.29 | HC |
| SRR1061615 | panicle | Heat Stress | 12.78 | HC |
| SRR1061612 | panicle | Normal | 25.51 | HC |
| SRR1061613 | panicle | Heat Stress | 23.94 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 18.33 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 51.52 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 31.24 | HC |
| SRR1061618 | flag_leaf | Normal | 33.79 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 41.78 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 26.51 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 148.95 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 69.93 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 85.32 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 93.92 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 128.93 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 29.42 | HC |
| SRR089620 | panicle | drought | 9.38 | HC |
| SRR3140957 | leaf | "45C, 24h" | 16.44 | HC |
| SRR089622 | panicle | salt | 9.12 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 125.77 | HC |
| SRR2544786 | embryo | dry seed | 64.81 | HC |
| SRR4098172 | seedling | Cold (4C) | 19.49 | HC |
| SRR3140956 | leaf | "45C, 24h" | 32.33 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 45.13 | HC |
| SRR3140953 | leaf | "45C, 0h" | 9.29 | HC |
| SRR6810102 | seedling | seedling | 56.94 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 118.26 | HC |
| SRR10956502 | panicle | WT | 28.64 | HC |
| SRR10956501 | panicle | WT | 34.06 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 186.87 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 19.43 | HC |
| SRR8258048 | leaf_sheath | R_bph | 116.80 | HC |
| SRR1740023 | seedling | IR64-Control | 38.83 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 41.13 | HC |
| SRR1740025 | seedling | PK-Control | 21.21 | HC |
| SRR1740024 | seedling | N22-Control | 46.77 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 105.77 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 189.83 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 37.59 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 370.20 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 168.10 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 191.31 | HC |
| SRR1654490 | leaf | wild type | 57.94 | HC |
| SRR3110557 | shoot | shoot treated | 68.11 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 39.32 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 46.63 | HC |
| SRR8258051 | leaf_sheath | R_bph | 121.57 | HC |