| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 338.98 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 241.60 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 17.78 | HC |
| SRR8258050 | leaf_sheath | R_bph | 145.11 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 17.07 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 335.12 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 212.11 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 185.96 | HC |
| SRR10690152 | leaf | IRBB5_0h | 1138.27 | HC |
| SRR7058097 | leaf | rice_mock | 37.06 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 178.13 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 92.03 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 35.57 | HC |
| SRR10690151 | leaf | IRBB5_0h | 835.83 | HC |
| SRR1061624 | panicle | Normal | 14.85 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 43.62 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 179.87 | HC |
| SRR10704058 | leaf | Glyphosate | 158.67 | HC |
| SRR447128 | root | As(III) 20 uM | 15.27 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 256.77 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 35.34 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 12.42 | HC |
| SRR1013787 | panicle | PA64s_PA | 13.91 | HC |
| SRR1013788 | panicle | LYP9_PA | 7.52 | HC |
| SRR9070101 | shoot_base | WT_base | 14.55 | HC |
| SRR089619 | panicle | control | 33.44 | HC |
| SRR447135 | shoot | As(III) 20 uM | 85.97 | HC |
| SRR447134 | shoot | As(III) 80 uM | 26.13 | HC |
| SRR447133 | shoot | As(III) 20 uM | 37.43 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 61.53 | HC |
| SRR447131 | root | As(III) 80 uM | 49.08 | HC |
| SRR447130 | root | As(III) 20 uM | 46.04 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 38.71 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 44.32 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 121.35 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 35.34 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 612.46 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 461.80 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 269.57 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 550.87 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 103.52 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 319.08 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 98.88 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 216.93 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 483.53 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 596.09 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 15.90 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 19.12 | HC |
| SRR447129 | root | As(III) 80 uM | 54.62 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 51.13 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 28.04 | HC |
| SRR447136 | shoot | As(III) 80 uM | 61.77 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 11.04 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 106.08 | HC |
| SRR10704060 | leaf | Glyphosate | 167.96 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 27.79 | HC |
| SRR3140952 | leaf | "45C, 0h" | 14.16 | HC |
| SRR976171 | lamina_joint | wild type | 33.04 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 17.15 | HC |
| SRR9070100 | shoot_base | WT_base | 7.92 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 12.63 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 14.25 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 4.26 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 6.01 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 4.23 | HC |
| SRR8649147 | panicle | panicle tissue | 6.53 | HC |
| SRR10704055 | leaf | CK | 121.98 | HC |
| SRR10704057 | leaf | CK | 325.19 | HC |
| SRR10704056 | leaf | CK | 148.72 | HC |
| SRR10704059 | leaf | Glyphosate | 25.41 | HC |
| SRR9070102 | shoot_base | WT_base | 9.46 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 15.65 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 122.38 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 215.97 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 149.57 | HC |
| SRR10690143 | leaf | IR24_0h | 996.28 | HC |
| SRR2646852 | panicle | FP | 205.00 | HC |
| SRR2646853 | panicle | FP | 256.89 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 43.60 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 200.55 | HC |
| SRR2646854 | panicle | SP | 183.39 | HC |
| SRR2646855 | panicle | SP | 276.38 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 102.66 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 31.93 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 30.52 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 19.93 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 14.07 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 24.09 | HC |
| SRR6365692 | panicle | Wild type | 17.54 | HC |
| SRR6365693 | panicle | Wild type | 9.91 | HC |
| SRR6365694 | panicle | Wild type | 7.79 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 109.01 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 26.87 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 94.21 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 107.24 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 36.10 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 194.02 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 176.15 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 32.71 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 31.60 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 89.15 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 392.52 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 86.62 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 921.23 | HC |
| SRR10690153 | leaf | IRBB5_0h | 508.00 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 429.94 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 923.20 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 377.00 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 418.45 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 312.80 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 110.19 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 58.99 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 48.84 | HC |
| SRR1061616 | panicle | Normal | 5.36 | HC |
| SRR1061617 | panicle | Heat Stress | 11.07 | HC |
| SRR1061614 | panicle | Normal | 6.08 | HC |
| SRR1061615 | panicle | Heat Stress | 10.46 | HC |
| SRR1061612 | panicle | Normal | 14.11 | HC |
| SRR1061613 | panicle | Heat Stress | 21.99 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 26.24 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 10.32 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 14.75 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 170.85 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 126.07 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 10.52 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 153.91 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 66.69 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 63.61 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 70.46 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 12.20 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 14.00 | HC |
| SRR3140954 | leaf | "45C, 12h" | 21.97 | HC |
| SRR089621 | panicle | cold | 47.76 | HC |
| SRR089620 | panicle | drought | 49.81 | HC |
| SRR3140957 | leaf | "45C, 24h" | 147.57 | HC |
| SRR089622 | panicle | salt | 25.90 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 18.39 | HC |
| SRR2544786 | embryo | dry seed | 10.27 | HC |
| SRR4098172 | seedling | Cold (4C) | 14.80 | HC |
| SRR3140956 | leaf | "45C, 24h" | 122.64 | HC |
| SRR3140953 | leaf | "45C, 0h" | 25.92 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 108.93 | HC |
| SRR10956502 | panicle | WT | 36.27 | HC |
| SRR10956501 | panicle | WT | 37.43 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 190.16 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 376.34 | HC |
| SRR8258048 | leaf_sheath | R_bph | 202.61 | HC |
| SRR1740023 | seedling | IR64-Control | 19.12 | HC |
| SRR1740024 | seedling | N22-Control | 22.44 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 23.00 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 24.94 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 14.44 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 56.75 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 207.05 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 18.82 | HC |
| SRR5940086 | panicle | Wild type | 31.25 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 4.70 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 4.85 | HC |
| SRR8258051 | leaf_sheath | R_bph | 131.82 | HC |