| SRR6810106 | panicle | panicle | 32.33 | HC |
| SRR7058097 | leaf | rice_mock | 211.18 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 10.61 | HC |
| SRR7058098 | leaf | rice_RSV | 131.48 | HC |
| SRR2154074 | seed | Nipponbare_seed | 16.74 | HC |
| SRR1061625 | panicle | Heat Stress | 18.89 | HC |
| SRR1061624 | panicle | Normal | 58.91 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 23.24 | HC |
| SRR10704058 | leaf | Glyphosate | 33.09 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 28.45 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 61.61 | HC |
| SRR504363 | leaf | 93-11 X NPB | 54.58 | HC |
| SRR9070101 | shoot_base | WT_base | 10.13 | HC |
| SRR6810105 | panicle | panicle | 25.76 | HC |
| SRR1849765 | leaf | Control 30min | 49.56 | HC |
| SRR1849767 | leaf | Control 30min | 54.85 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 83.26 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 56.37 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 264.57 | HC |
| SRR6498701 | leaf | "WT, Control" | 177.45 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 268.13 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 26.74 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 164.79 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 122.35 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 81.96 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 20.27 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 46.78 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 11.69 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 19.21 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 39.34 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 28.80 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 62.07 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 100.66 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 64.12 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 92.58 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 104.49 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 72.29 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 91.03 | HC |
| SRR1849773 | leaf | Control 120min | 65.87 | HC |
| SRR1849772 | leaf | Control 120min | 50.68 | HC |
| SRR1849771 | leaf | Control 120min | 69.16 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 47.47 | HC |
| SRR7058096 | leaf | rice_mock | 222.62 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 32.09 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 21.61 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 36.74 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 26.48 | HC |
| SRR2154075 | seed | Taipei309_seed | 9.91 | HC |
| SRR4098209 | leaf | No treatment | 16.19 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 22.87 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 68.01 | HC |
| SRR9070100 | shoot_base | WT_base | 10.64 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 332.48 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 27.10 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 68.43 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 54.49 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 40.99 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 22.74 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 22.42 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 24.91 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 24.00 | HC |
| SRR8649147 | panicle | panicle tissue | 65.40 | HC |
| SRR4098207 | panicle | No treatment | 7.15 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 16.54 | HC |
| SRR9070102 | shoot_base | WT_base | 9.21 | HC |
| SRR6498699 | leaf | "WT, Control" | 233.82 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 68.88 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 40.42 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 25.13 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 18.89 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 17.90 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 25.95 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 13.95 | HC |
| SRR6365692 | panicle | Wild type | 16.31 | HC |
| SRR6365693 | panicle | Wild type | 18.00 | HC |
| SRR6365694 | panicle | Wild type | 18.99 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 97.28 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 26.14 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 16.90 | HC |
| SRR6810101 | seedling | seedling | 136.72 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 22.29 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 20.10 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 17.86 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 30.57 | HC |
| SRR1849784 | root | Control 120min | 20.39 | HC |
| SRR6365691 | panicle | Wild type | 12.64 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 39.70 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 18.76 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 49.28 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 24.70 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 53.10 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 33.27 | HC |
| SRR3110556 | shoot | shoot control | 71.13 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 11.77 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 19.74 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 22.55 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 67.44 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 316.49 | HC |
| SRR1061618 | flag_leaf | Normal | 145.11 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 59.28 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 35.21 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 36.44 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 188.36 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 43.58 | HC |
| SRR089621 | panicle | cold | 15.04 | HC |
| SRR089620 | panicle | drought | 15.61 | HC |
| SRR089622 | panicle | salt | 10.54 | HC |
| SRR504360 | leaf | Nipponbare | 89.26 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 173.18 | HC |
| SRR2544786 | embryo | dry seed | 102.53 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 47.97 | HC |
| SRR6810102 | seedling | seedling | 172.48 | HC |
| SRR10956502 | panicle | WT | 23.67 | HC |
| SRR10956501 | panicle | WT | 22.96 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 34.11 | HC |
| SRR1740024 | seedling | N22-Control | 37.82 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 59.35 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 27.66 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 28.38 | HC |
| SRR1654490 | leaf | wild type | 18.95 | HC |
| SRR3110557 | shoot | shoot treated | 57.87 | HC |
| SRR5940086 | panicle | Wild type | 25.65 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 4.76 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 4.53 | HC |
| SRR504362 | leaf | NPB X 93-11 | 36.23 | HC |