| SRR12416746 | blade | sRNA_Blade_S4 | 18.89 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 210.10 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 258.48 | HC |
| SRR8258050 | leaf_sheath | R_bph | 347.54 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 184.88 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 290.98 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 193.88 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 120.62 | HC |
| SRR10690152 | leaf | IRBB5_0h | 22.16 | HC |
| SRR6810106 | panicle | panicle | 7.11 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 21.11 | HC |
| SRR7058098 | leaf | rice_RSV | 101.75 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 79.35 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 28.01 | HC |
| SRR2154074 | seed | Nipponbare_seed | 10.61 | HC |
| SRR2154072 | seed | Rathuwee_seed | 28.10 | HC |
| SRR2154070 | seed | Guangluai4_seed | 48.11 | HC |
| SRR2154071 | seed | KDM105_seed | 11.38 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 61.97 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 51.70 | HC |
| SRR1061625 | panicle | Heat Stress | 7.73 | HC |
| SRR1061624 | panicle | Normal | 27.85 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 43.32 | HC |
| SRR1061622 | flag_leaf | Normal | 169.89 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 283.83 | HC |
| SRR1061620 | flag_leaf | Normal | 73.49 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 48.24 | HC |
| SRR10704058 | leaf | Glyphosate | 53.84 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 40.58 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 63.67 | HC |
| SRR1013787 | panicle | PA64s_PA | 15.07 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 73.45 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 257.93 | HC |
| SRR1013789 | panicle | 93-11_PA | 8.40 | HC |
| SRR1013788 | panicle | LYP9_PA | 17.93 | HC |
| SRR6810105 | panicle | panicle | 7.52 | HC |
| SRR089619 | panicle | control | 19.75 | HC |
| SRR1849765 | leaf | Control 30min | 77.95 | HC |
| SRR1849767 | leaf | Control 30min | 52.58 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 19.10 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 68.79 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 1188.12 | HC |
| SRR3203907 | leaf | WT | 46.28 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 14.50 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 12.35 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 21.15 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 12.26 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 27.67 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 23.71 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 117.96 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 22.12 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 61.61 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 71.87 | HC |
| SRR1849773 | leaf | Control 120min | 100.45 | HC |
| SRR1849772 | leaf | Control 120min | 43.97 | HC |
| SRR1849771 | leaf | Control 120min | 72.62 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 82.80 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 203.55 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 402.91 | HC |
| SRR3130370 | leaf | control 8 hour | 244.38 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 669.99 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 131.48 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 12.65 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 21.88 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 169.48 | HC |
| SRR6365689 | seedling | Wild type | 363.83 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 119.94 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 13.24 | HC |
| SRR10704060 | leaf | Glyphosate | 62.07 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 168.61 | HC |
| SRR2154075 | seed | Taipei309_seed | 14.00 | HC |
| SRR3140952 | leaf | "45C, 0h" | 13.00 | HC |
| SRR976171 | lamina_joint | wild type | 43.66 | HC |
| SRR4098209 | leaf | No treatment | 14.81 | HC |
| SRR3130369 | leaf | control 8 hour | 252.93 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 206.81 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 20.23 | HC |
| SRR4098205 | seedling | Heat (50C) | 18.11 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 50.92 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 19.83 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 20.49 | HC |
| SRR3130365 | leaf | control 0 hour | 486.67 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 652.16 | HC |
| SRR3130366 | leaf | control 0 hour | 311.71 | HC |
| SRR2862364 | leaf | mock leaf cells | 423.51 | HC |
| SRR2862365 | leaf | mock leaf cells | 198.05 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 265.87 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 159.80 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 39.14 | HC |
| SRR2862363 | leaf | mock leaf cells | 393.58 | HC |
| SRR10704055 | leaf | CK | 29.22 | HC |
| SRR10704057 | leaf | CK | 64.65 | HC |
| SRR10704056 | leaf | CK | 30.61 | HC |
| SRR10704059 | leaf | Glyphosate | 23.19 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 41.92 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 29.82 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 24.76 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 21.07 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 64.39 | HC |
| SRR10690144 | leaf | IR24_0h | 87.38 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 102.55 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 74.03 | HC |
| SRR10690143 | leaf | IR24_0h | 54.76 | HC |
| SRR10690142 | leaf | IR24_0h | 76.81 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 20.62 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 80.03 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 83.58 | HC |
| SRR4098203 | seedling | No treatment | 18.62 | HC |
| SRR6365690 | seedling | Wild type | 340.82 | HC |
| SRR6365693 | panicle | Wild type | 7.76 | HC |
| SRR6365694 | panicle | Wild type | 7.94 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 19.08 | HC |
| SRR6810101 | seedling | seedling | 218.36 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 115.67 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 115.01 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 8.83 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 246.67 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 144.83 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 32.37 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 48.65 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 32.66 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 11.63 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 6.26 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 428.36 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 28.49 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 506.89 | HC |
| SRR1061616 | panicle | Normal | 15.63 | HC |
| SRR1061617 | panicle | Heat Stress | 28.65 | HC |
| SRR1061614 | panicle | Normal | 12.85 | HC |
| SRR1061615 | panicle | Heat Stress | 32.74 | HC |
| SRR1061612 | panicle | Normal | 33.06 | HC |
| SRR1061613 | panicle | Heat Stress | 49.76 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 25.02 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 43.91 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 25.64 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 159.48 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 208.12 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 132.60 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 108.10 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 150.41 | HC |
| SRR3140954 | leaf | "45C, 12h" | 22.71 | HC |
| SRR089621 | panicle | cold | 43.35 | HC |
| SRR089620 | panicle | drought | 36.53 | HC |
| SRR3140957 | leaf | "45C, 24h" | 144.63 | HC |
| SRR089622 | panicle | salt | 23.94 | HC |
| SRR3140953 | leaf | "45C, 0h" | 10.19 | HC |
| SRR6810102 | seedling | seedling | 268.18 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 120.52 | HC |
| SRR10956502 | panicle | WT | 13.87 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 70.10 | HC |
| SRR10956501 | panicle | WT | 14.78 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 252.14 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 10.21 | HC |
| SRR8258048 | leaf_sheath | R_bph | 357.33 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 91.91 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 166.36 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 271.83 | HC |
| SRR1654490 | leaf | wild type | 32.51 | HC |
| SRR5940086 | panicle | Wild type | 38.55 | HC |
| SRR8258051 | leaf_sheath | R_bph | 340.89 | HC |