| SRR447131 | root | As(III) 80 uM | 8.19 | HC |
| SRR447130 | root | As(III) 20 uM | 75.23 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 650.67 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 492.88 | HC |
| SRR8258050 | leaf_sheath | R_bph | 385.45 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 44.48 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 432.76 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 403.99 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 415.20 | HC |
| SRR10690152 | leaf | IRBB5_0h | 134.86 | HC |
| SRR6810106 | panicle | panicle | 22.62 | HC |
| SRR7058097 | leaf | rice_mock | 1847.60 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 846.14 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 52.41 | HC |
| SRR7058098 | leaf | rice_RSV | 1684.63 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 281.94 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 53.02 | HC |
| SRR2154077 | seedling | KDM105_seedling | 52.55 | HC |
| SRR2154074 | seed | Nipponbare_seed | 548.75 | HC |
| SRR10690151 | leaf | IRBB5_0h | 191.74 | HC |
| SRR2154072 | seed | Rathuwee_seed | 314.89 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 806.74 | HC |
| SRR2154070 | seed | Guangluai4_seed | 275.01 | HC |
| SRR2154071 | seed | KDM105_seed | 180.12 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 35.11 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 299.14 | HC |
| SRR1061625 | panicle | Heat Stress | 18.82 | HC |
| SRR1061624 | panicle | Normal | 59.64 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 25.89 | HC |
| SRR1061622 | flag_leaf | Normal | 56.69 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 23.26 | HC |
| SRR1061620 | flag_leaf | Normal | 30.20 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 195.61 | HC |
| SRR10704058 | leaf | Glyphosate | 53.84 | HC |
| SRR447128 | root | As(III) 20 uM | 45.27 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 144.95 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 101.75 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 71.53 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 104.31 | HC |
| SRR1013787 | panicle | PA64s_PA | 488.41 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 53.09 | HC |
| SRR504363 | leaf | 93-11 X NPB | 12218.83 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 901.47 | HC |
| SRR1013789 | panicle | 93-11_PA | 413.01 | HC |
| SRR1013788 | panicle | LYP9_PA | 424.04 | HC |
| SRR9070101 | shoot_base | WT_base | 386.77 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 178.49 | HC |
| SRR6810105 | panicle | panicle | 24.64 | HC |
| SRR089619 | panicle | control | 137.03 | HC |
| SRR447135 | shoot | As(III) 20 uM | 33.20 | HC |
| SRR447134 | shoot | As(III) 80 uM | 46.86 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 123.76 | HC |
| SRR1849765 | leaf | Control 30min | 50.00 | HC |
| SRR1849767 | leaf | Control 30min | 41.69 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 56.10 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 237.41 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 136.73 | HC |
| SRR6498701 | leaf | "WT, Control" | 102.30 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 151.83 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 425.06 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 9.39 | HC |
| SRR3203907 | leaf | WT | 530.12 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 112.08 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 311.76 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 482.99 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 101.74 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 249.36 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 57.89 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 213.69 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 308.63 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 170.72 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 267.71 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 239.88 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 188.67 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 108.84 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 124.15 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 115.54 | HC |
| SRR447129 | root | As(III) 80 uM | 29.71 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 19.83 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 47.16 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 61.77 | HC |
| SRR1849773 | leaf | Control 120min | 59.81 | HC |
| SRR1849772 | leaf | Control 120min | 42.13 | HC |
| SRR1849771 | leaf | Control 120min | 70.14 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 53.27 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 439.41 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 174.23 | HC |
| SRR3130370 | leaf | control 8 hour | 375.53 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 280.52 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 167.42 | HC |
| SRR7058096 | leaf | rice_mock | 2658.96 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 14.04 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 20.77 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 149.43 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 24.42 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 57.64 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 52.03 | HC |
| SRR447136 | shoot | As(III) 80 uM | 53.05 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 67.14 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 59.20 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 19.57 | HC |
| SRR10704060 | leaf | Glyphosate | 45.16 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 50.82 | HC |
| SRR2154075 | seed | Taipei309_seed | 373.00 | HC |
| SRR976171 | lamina_joint | wild type | 206.70 | HC |
| SRR4098208 | root | No treatment | 327.47 | HC |
| SRR4098209 | leaf | No treatment | 136.89 | HC |
| SRR3130369 | leaf | control 8 hour | 417.39 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 366.12 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 83.91 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 85.81 | HC |
| SRR9070100 | shoot_base | WT_base | 454.76 | HC |
| SRR4098205 | seedling | Heat (50C) | 41.48 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 104.58 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 112.26 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 118.90 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 99.06 | HC |
| SRR3130365 | leaf | control 0 hour | 205.07 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 87.13 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 279.86 | HC |
| SRR3130366 | leaf | control 0 hour | 420.04 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 7.00 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 7.50 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 4.56 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 6.80 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 4.69 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 5.63 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 25.66 | HC |
| SRR2862364 | leaf | mock leaf cells | 508.74 | HC |
| SRR2862365 | leaf | mock leaf cells | 530.59 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 654.06 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 406.46 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 130.15 | HC |
| SRR2862363 | leaf | mock leaf cells | 567.72 | HC |
| SRR8649147 | panicle | panicle tissue | 42.91 | HC |
| SRR4098207 | panicle | No treatment | 50.16 | HC |
| SRR10704055 | leaf | CK | 38.40 | HC |
| SRR10704057 | leaf | CK | 71.69 | HC |
| SRR10704056 | leaf | CK | 38.99 | HC |
| SRR10704059 | leaf | Glyphosate | 52.81 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 45.49 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 64.59 | HC |
| SRR9070102 | shoot_base | WT_base | 408.00 | HC |
| SRR6498699 | leaf | "WT, Control" | 79.51 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 57.72 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 175.38 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 77.86 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 211.22 | HC |
| SRR10690144 | leaf | IR24_0h | 177.35 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 205.26 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 129.62 | HC |
| SRR10690143 | leaf | IR24_0h | 187.20 | HC |
| SRR10690142 | leaf | IR24_0h | 174.30 | HC |
| SRR2646852 | panicle | FP | 62.70 | HC |
| SRR2646853 | panicle | FP | 54.03 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 29.77 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 73.45 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 231.42 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 262.24 | HC |
| SRR2646854 | panicle | SP | 52.31 | HC |
| SRR2646855 | panicle | SP | 45.61 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 11.25 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 11.44 | HC |
| SRR4098203 | seedling | No treatment | 42.44 | HC |
| SRR6365692 | panicle | Wild type | 19.59 | HC |
| SRR6365693 | panicle | Wild type | 18.67 | HC |
| SRR6365694 | panicle | Wild type | 17.13 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 169.59 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 13.85 | HC |
| SRR6810101 | seedling | seedling | 37.02 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 366.83 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 328.80 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 367.98 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 321.69 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 80.44 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 121.02 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 345.93 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 315.70 | HC |
| SRR1849784 | root | Control 120min | 24.05 | HC |
| SRR6365691 | panicle | Wild type | 19.62 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 230.05 | HC |
| SRR10690153 | leaf | IRBB5_0h | 284.98 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 270.99 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 322.65 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 189.52 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 189.80 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 195.50 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 142.11 | HC |
| SRR3110556 | shoot | shoot control | 691.04 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 186.79 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 53.67 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 278.69 | HC |
| SRR1061616 | panicle | Normal | 28.48 | HC |
| SRR1061617 | panicle | Heat Stress | 16.26 | HC |
| SRR1061614 | panicle | Normal | 15.06 | HC |
| SRR1061615 | panicle | Heat Stress | 16.74 | HC |
| SRR1061612 | panicle | Normal | 33.06 | HC |
| SRR1061613 | panicle | Heat Stress | 30.16 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 3.35 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 72.77 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 168.17 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 18.13 | HC |
| SRR1061618 | flag_leaf | Normal | 40.74 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 55.95 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 79.39 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 42.81 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 273.42 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 251.29 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 201.64 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 346.16 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 87.06 | HC |
| SRR089621 | panicle | cold | 100.73 | HC |
| SRR089620 | panicle | drought | 128.96 | HC |
| SRR089622 | panicle | salt | 116.64 | HC |
| SRR504360 | leaf | Nipponbare | 19619.18 | HC |
| SRR504361 | leaf | Nov-93 | 2713.66 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 309.58 | HC |
| SRR2544786 | embryo | dry seed | 156.32 | HC |
| SRR4098172 | seedling | Cold (4C) | 74.01 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 55.91 | HC |
| SRR6810102 | seedling | seedling | 40.92 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 336.42 | HC |
| SRR10956502 | panicle | WT | 66.81 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 693.21 | HC |
| SRR10956501 | panicle | WT | 67.77 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 338.03 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 254.61 | HC |
| SRR8258048 | leaf_sheath | R_bph | 505.72 | HC |
| SRR1740023 | seedling | IR64-Control | 55.73 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 600.00 | HC |
| SRR1740025 | seedling | PK-Control | 51.44 | HC |
| SRR1740024 | seedling | N22-Control | 99.13 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 47.57 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 59.42 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 74.15 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 36.38 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 364.31 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 12.17 | HC |
| SRR1654490 | leaf | wild type | 940.17 | HC |
| SRR3110557 | shoot | shoot treated | 293.36 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 164.34 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 244.95 | HC |
| SRR8258051 | leaf_sheath | R_bph | 289.40 | HC |
| SRR504362 | leaf | NPB X 93-11 | 4938.65 | HC |