| SRR8258050 | leaf_sheath | R_bph | 2.85 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 0.99 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 0.91 | MC |
| SRR7058097 | leaf | rice_mock | 3.55 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 0.15 | MC |
| SRR7058098 | leaf | rice_RSV | 4.68 | MC |
| SRR2154076 | seedling | Guangluai4_seedling | 0.56 | MC |
| SRR2154074 | seed | Nipponbare_seed | 1.29 | MC |
| SRR2154072 | seed | Rathuwee_seed | 0.36 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 0.27 | MC |
| SRR2154070 | seed | Guangluai4_seed | 0.31 | MC |
| SRR2154071 | seed | KDM105_seed | 1.51 | MC |
| SRR1061625 | panicle | Heat Stress | 0.32 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 0.51 | MC |
| SRR1061622 | flag_leaf | Normal | 0.24 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 0.45 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.30 | MC |
| SRR504363 | leaf | 93-11 X NPB | 2.86 | MC |
| SRR9070101 | shoot_base | WT_base | 1.17 | MC |
| SRR089619 | panicle | control | 0.45 | MC |
| SRR447134 | shoot | As(III) 80 uM | 0.40 | MC |
| SRR447133 | shoot | As(III) 20 uM | 0.46 | MC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 0.69 | MC |
| SRR447131 | root | As(III) 80 uM | 0.50 | MC |
| SRR447130 | root | As(III) 20 uM | 0.69 | MC |
| SRR1849765 | leaf | Control 30min | 4.95 | MC |
| SRR1849767 | leaf | Control 30min | 0.91 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 1.81 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 0.38 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 2.49 | MC |
| SRR6498701 | leaf | "WT, Control" | 1.17 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1.85 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 2.07 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 0.84 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 1.26 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 0.45 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 0.20 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 0.40 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 2.05 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.85 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.92 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 0.76 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 4.25 | MC |
| SRR1849773 | leaf | Control 120min | 2.20 | MC |
| SRR1849771 | leaf | Control 120min | 0.98 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 3.16 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 0.80 | MC |
| SRR7058096 | leaf | rice_mock | 2.01 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 0.16 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 1.95 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 1.03 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.78 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 3.00 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 0.43 | MC |
| SRR10704060 | leaf | Glyphosate | 0.69 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 0.39 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 0.26 | MC |
| SRR2154075 | seed | Taipei309_seed | 0.87 | MC |
| SRR976171 | lamina_joint | wild type | 4.72 | MC |
| SRR4098209 | leaf | No treatment | 0.80 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 0.44 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.68 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1.62 | MC |
| SRR9070100 | shoot_base | WT_base | 0.86 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.82 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 2.40 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.80 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 0.98 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1.81 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 0.27 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 0.49 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 0.42 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 0.54 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 0.61 | MC |
| SRR2862364 | leaf | mock leaf cells | 1.15 | MC |
| SRR2862365 | leaf | mock leaf cells | 0.81 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 15.57 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 7.52 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 0.66 | MC |
| SRR2862363 | leaf | mock leaf cells | 19.76 | MC |
| SRR8649147 | panicle | panicle tissue | 0.40 | MC |
| SRR10704057 | leaf | CK | 0.93 | MC |
| SRR10704056 | leaf | CK | 0.32 | MC |
| SRR10704059 | leaf | Glyphosate | 0.27 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1.27 | MC |
| SRR9070102 | shoot_base | WT_base | 0.74 | MC |
| SRR6498699 | leaf | "WT, Control" | 1.99 | MC |
| SRR2154079 | seedling | Heukgyeong_seedling | 4.55 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 0.80 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1.19 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 0.44 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 0.50 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 0.66 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 0.39 | MC |
| SRR6365693 | panicle | Wild type | 0.34 | MC |
| SRR6365694 | panicle | Wild type | 0.31 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 0.15 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 0.20 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 0.33 | MC |
| SRR3110556 | shoot | shoot control | 0.82 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 0.90 | MC |
| SRR1061612 | panicle | Normal | 0.49 | MC |
| SRR1061613 | panicle | Heat Stress | 0.37 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 0.24 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.19 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 0.36 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 2.63 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 1.18 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 0.98 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 2.74 | MC |
| SRR089621 | panicle | cold | 0.40 | MC |
| SRR089622 | panicle | salt | 0.54 | MC |
| SRR504360 | leaf | Nipponbare | 1.54 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 0.59 | MC |
| SRR2544786 | embryo | dry seed | 0.24 | MC |
| SRR4098172 | seedling | Cold (4C) | 0.72 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1.12 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 2.26 | MC |
| SRR10956501 | panicle | WT | 0.33 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 0.28 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 1.62 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1.64 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 0.81 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 0.73 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 0.40 | MC |
| SRR1654490 | leaf | wild type | 3.14 | MC |
| SRR3110557 | shoot | shoot treated | 1.14 | MC |
| SRR5940086 | panicle | Wild type | 0.39 | MC |
| SRR504362 | leaf | NPB X 93-11 | 3.79 | MC |