| SRR9937395 | spikelet | sRNA basal spikelets | 284.75 | MC |
| SRR976171 | lamina_joint | wild type | 20.80 | MC |
| SRR7058098 | leaf | rice_RSV | 30.21 | MC |
| SRR7058097 | leaf | rice_mock | 45.48 | MC |
| SRR7058096 | leaf | rice_mock | 62.28 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 3.66 | MC |
| SRR6498701 | leaf | "WT, Control" | 17.04 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 57.40 | MC |
| SRR6498699 | leaf | "WT, Control" | 28.59 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 30.04 | MC |
| SRR6365694 | panicle | Wild type | 8.88 | MC |
| SRR6365691 | panicle | Wild type | 6.54 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 5.54 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 3.76 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 30.10 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 19.65 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 30.90 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 20.45 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 22.80 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 21.20 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 47.64 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 15.10 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 7.64 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 54.68 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 4.80 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 7.05 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 9.92 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 21.72 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 11.46 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 10.95 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 10.66 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 8.18 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 6.66 | MC |
| SRR504362 | leaf | NPB X 93-11 | 47.92 | MC |
| SRR447134 | shoot | As(III) 80 uM | 5.78 | MC |
| SRR447130 | root | As(III) 20 uM | 4.17 | MC |
| SRR447128 | root | As(III) 20 uM | 3.64 | MC |
| SRR426799 | leaf | mock-treated susceptible rice line | 49.02 | MC |
| SRR4098208 | root | No treatment | 61.96 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 29.05 | MC |
| SRR4098205 | seedling | Heat (50C) | 116.80 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 8.72 | MC |
| SRR4098203 | seedling | No treatment | 19.00 | MC |
| SRR4098172 | seedling | Cold (4C) | 97.80 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 20.28 | MC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 10.35 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 5.70 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 16.60 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 11.92 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 14.72 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 23.36 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 13.96 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 15.54 | MC |
| SRR3203907 | leaf | WT | 286.66 | MC |
| SRR3140957 | leaf | "45C, 24h" | 49.65 | MC |
| SRR3140956 | leaf | "45C, 24h" | 50.70 | MC |
| SRR3140953 | leaf | "45C, 0h" | 6.10 | MC |
| SRR3140952 | leaf | "45C, 0h" | 6.21 | MC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 172.56 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 115.68 | MC |
| SRR3130369 | leaf | control 8 hour | 204.72 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 96.69 | MC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 129.51 | MC |
| SRR3130366 | leaf | control 0 hour | 160.23 | MC |
| SRR3130365 | leaf | control 0 hour | 124.32 | MC |
| SRR3110557 | shoot | shoot treated | 6.81 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 101.45 | MC |
| SRR2862363 | leaf | mock leaf cells | 86.19 | MC |
| SRR2646854 | panicle | SP | 15.24 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 12.15 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 4.72 | MC |
| SRR2154078 | seedling | Rathuwee_seedling | 452.55 | MC |
| SRR2154077 | seedling | KDM105_seedling | 282.00 | MC |
| SRR2154076 | seedling | Guangluai4_seedling | 167.62 | MC |
| SRR2154075 | seed | Taipei309_seed | 41.40 | MC |
| SRR2154074 | seed | Nipponbare_seed | 49.52 | MC |
| SRR2154072 | seed | Rathuwee_seed | 28.50 | MC |
| SRR2154071 | seed | KDM105_seed | 16.52 | MC |
| SRR2154070 | seed | Guangluai4_seed | 7.46 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 12.55 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 23.95 | MC |
| SRR1849772 | leaf | Control 120min | 9.15 | MC |
| SRR1849771 | leaf | Control 120min | 9.90 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 24.15 | MC |
| SRR1849765 | leaf | Control 30min | 13.53 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 9.70 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 9.35 | MC |
| SRR1740025 | seedling | PK-Control | 2.11 | MC |
| SRR1740023 | seedling | IR64-Control | 16.25 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 10.65 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 67.30 | MC |
| SRR10956502 | panicle | WT | 4.78 | MC |
| SRR10956501 | panicle | WT | 3.36 | MC |
| SRR10704059 | leaf | Glyphosate | 128.58 | MC |
| SRR10690143 | leaf | IR24_0h | 71.47 | MC |
| SRR1061625 | panicle | Heat Stress | 6.52 | MC |
| SRR1061624 | panicle | Normal | 8.19 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 25.26 | MC |
| SRR1061620 | flag_leaf | Normal | 12.26 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 21.57 | MC |
| SRR1061616 | panicle | Normal | 11.45 | MC |
| SRR1061615 | panicle | Heat Stress | 8.00 | MC |
| SRR1061614 | panicle | Normal | 12.15 | MC |
| SRR1061613 | panicle | Heat Stress | 9.72 | MC |
| SRR1061612 | panicle | Normal | 18.18 | MC |
| SRR089622 | panicle | salt | 29.45 | MC |
| SRR089619 | panicle | control | 24.70 | MC |