| SRR9937394 | spikelet | sRNA apical spikelets | 15.96 | MC |
| SRR976171 | lamina_joint | wild type | 22.11 | MC |
| SRR8649147 | panicle | panicle tissue | 3.14 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 17.40 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 8.88 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 5.78 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 9.76 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 22.08 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 36.30 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 51.40 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 53.68 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 38.00 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 8.86 | MC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 25.68 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 71.00 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 38.04 | MC |
| SRR8258051 | leaf_sheath | R_bph | 27.04 | MC |
| SRR8258050 | leaf_sheath | R_bph | 39.76 | MC |
| SRR8258048 | leaf_sheath | R_bph | 18.65 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 20.34 | MC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 44.56 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 6.75 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 58.08 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 23.52 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 12.63 | MC |
| SRR7058098 | leaf | rice_RSV | 18.06 | MC |
| SRR7058097 | leaf | rice_mock | 7.50 | MC |
| SRR6810106 | panicle | panicle | 26.72 | MC |
| SRR6810105 | panicle | panicle | 30.08 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 152.43 | MC |
| SRR6810102 | seedling | seedling | 154.87 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 36.70 | MC |
| SRR6498701 | leaf | "WT, Control" | 43.02 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 75.08 | MC |
| SRR6498699 | leaf | "WT, Control" | 34.56 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 37.11 | MC |
| SRR6365694 | panicle | Wild type | 27.08 | MC |
| SRR6365693 | panicle | Wild type | 28.40 | MC |
| SRR6365692 | panicle | Wild type | 14.68 | MC |
| SRR6365691 | panicle | Wild type | 32.24 | MC |
| SRR6365690 | seedling | Wild type | 8.45 | MC |
| SRR6365689 | seedling | Wild type | 7.48 | MC |
| SRR5940086 | panicle | Wild type | 14.46 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 7.02 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 6.34 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 34.74 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 74.25 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 62.79 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 49.41 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 54.75 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 61.35 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 6.21 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 5.19 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 4.59 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 3.15 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 29.52 | MC |
| SRR4098203 | seedling | No treatment | 27.74 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 6.02 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 10.59 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 11.43 | MC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 10.32 | MC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 10.68 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 6.32 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 6.10 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 6.66 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 5.04 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 8.36 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 8.19 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 9.72 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 17.28 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 7.14 | MC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 6.06 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 6.86 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 11.10 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 11.88 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 8.73 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 6.26 | MC |
| SRR3140956 | leaf | "45C, 24h" | 3.52 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 10.68 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 138.69 | MC |
| SRR2862363 | leaf | mock leaf cells | 5.88 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 21.87 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 12.78 | MC |
| SRR2154072 | seed | Rathuwee_seed | 5.28 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 20.73 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 17.58 | MC |
| SRR1849773 | leaf | Control 120min | 10.43 | MC |
| SRR1849772 | leaf | Control 120min | 31.14 | MC |
| SRR1849771 | leaf | Control 120min | 11.85 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 11.07 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 16.29 | MC |
| SRR1849765 | leaf | Control 30min | 8.10 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 6.09 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 7.89 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 5.76 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 13.32 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 8.04 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 9.09 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 17.10 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 15.87 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 10.53 | MC |
| SRR1740025 | seedling | PK-Control | 2.11 | MC |
| SRR1740023 | seedling | IR64-Control | 7.74 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 5.80 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 6.20 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 16.68 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 28.20 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 21.84 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 20.72 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 23.96 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 9.68 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 31.84 | MC |
| SRR10956502 | panicle | WT | 11.16 | MC |
| SRR10956501 | panicle | WT | 9.92 | MC |
| SRR10704058 | leaf | Glyphosate | 4.12 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 11.34 | MC |
| SRR10690153 | leaf | IRBB5_0h | 6.39 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 6.22 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 9.22 | MC |
| SRR1061625 | panicle | Heat Stress | 6.68 | MC |
| SRR1061624 | panicle | Normal | 41.58 | MC |
| SRR1061622 | flag_leaf | Normal | 26.34 | MC |
| SRR1061620 | flag_leaf | Normal | 28.72 | MC |
| SRR1061619 | flag_leaf | Heat Stress | 5.32 | MC |
| SRR1061617 | panicle | Heat Stress | 22.71 | MC |
| SRR1061616 | panicle | Normal | 33.84 | MC |
| SRR1061615 | panicle | Heat Stress | 33.66 | MC |
| SRR1061614 | panicle | Normal | 34.41 | MC |
| SRR1061613 | panicle | Heat Stress | 21.88 | MC |
| SRR1061612 | panicle | Normal | 20.32 | MC |
| SRR1013785 | flag_leaf | LYP9_FL | 8.50 | MC |
| SRR1013784 | flag_leaf | PA64s_FL | 7.82 | MC |
| SRR089622 | panicle | salt | 8.58 | MC |
| SRR089620 | panicle | drought | 9.84 | MC |
| SRR089619 | panicle | control | 4.38 | MC |