| SRR9937395 | spikelet | sRNA basal spikelets | 31.02 | MC |
| SRR9937394 | spikelet | sRNA apical spikelets | 28.24 | MC |
| SRR976171 | lamina_joint | wild type | 22.50 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 60.84 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 42.75 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 31.74 | MC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 19.08 | MC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 33.72 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 81.48 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 99.87 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 88.74 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 116.64 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 84.42 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 27.13 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 30.26 | MC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 97.89 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 183.48 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 100.32 | MC |
| SRR8258051 | leaf_sheath | R_bph | 72.92 | MC |
| SRR8258050 | leaf_sheath | R_bph | 74.38 | MC |
| SRR8258048 | leaf_sheath | R_bph | 40.75 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 8.90 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 16.77 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 8.22 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 6.44 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 7.00 | MC |
| SRR7058098 | leaf | rice_RSV | 132.36 | MC |
| SRR7058097 | leaf | rice_mock | 72.12 | MC |
| SRR7058096 | leaf | rice_mock | 63.96 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 28.86 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 23.58 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 283.34 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 32.20 | MC |
| SRR426799 | leaf | mock-treated susceptible rice line | 40.18 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 4.92 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 33.22 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 22.96 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 34.28 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 62.96 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 49.34 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 32.84 | MC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 83.94 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 52.26 | MC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 52.08 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 36.20 | MC |
| SRR3130370 | leaf | control 8 hour | 48.26 | MC |
| SRR3130369 | leaf | control 8 hour | 47.36 | MC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 37.12 | MC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 18.46 | MC |
| SRR3130366 | leaf | control 0 hour | 39.00 | MC |
| SRR3130365 | leaf | control 0 hour | 26.70 | MC |
| SRR3110557 | shoot | shoot treated | 20.30 | MC |
| SRR3110556 | shoot | shoot control | 41.84 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 20.76 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 43.43 | MC |
| SRR2862365 | leaf | mock leaf cells | 14.38 | MC |
| SRR2862364 | leaf | mock leaf cells | 24.98 | MC |
| SRR2862363 | leaf | mock leaf cells | 87.58 | MC |
| SRR2646855 | panicle | SP | 7.04 | MC |
| SRR2646854 | panicle | SP | 8.24 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 43.28 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 25.84 | MC |
| SRR2154081 | seedling | Taipei309_seedling | 80.34 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 14.88 | MC |
| SRR2154079 | seedling | Heukgyeong_seedling | 69.02 | MC |
| SRR2154078 | seedling | Rathuwee_seedling | 57.62 | MC |
| SRR2154077 | seedling | KDM105_seedling | 40.70 | MC |
| SRR2154075 | seed | Taipei309_seed | 45.94 | MC |
| SRR2154074 | seed | Nipponbare_seed | 53.50 | MC |
| SRR2154073 | seed | Heukgyeong_seed | 15.98 | MC |
| SRR2154072 | seed | Rathuwee_seed | 25.00 | MC |
| SRR2154071 | seed | KDM105_seed | 27.10 | MC |
| SRR1849784 | root | Control 120min | 16.74 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 30.52 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 115.68 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 141.64 | MC |
| SRR1849773 | leaf | Control 120min | 77.40 | MC |
| SRR1849771 | leaf | Control 120min | 94.86 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 85.42 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 129.12 | MC |
| SRR1849767 | leaf | Control 30min | 71.64 | MC |
| SRR1849765 | leaf | Control 30min | 142.38 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 24.16 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 22.16 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 13.22 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 46.18 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 41.46 | MC |
| SRR1654490 | leaf | wild type | 111.92 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 41.79 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 39.84 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 24.02 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 23.19 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 37.08 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 47.04 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 32.28 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 12.09 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 29.67 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 27.81 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 53.19 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 13.88 | MC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 7.72 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 10.12 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 15.66 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 70.20 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 35.40 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 90.72 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 44.43 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 19.26 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 63.06 | MC |
| SRR10704058 | leaf | Glyphosate | 11.46 | MC |
| SRR10704057 | leaf | CK | 8.52 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 31.36 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 33.70 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 25.26 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 38.76 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 15.65 | MC |
| SRR10690153 | leaf | IRBB5_0h | 53.70 | MC |
| SRR10690152 | leaf | IRBB5_0h | 24.30 | MC |
| SRR10690151 | leaf | IRBB5_0h | 20.68 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 19.12 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 26.94 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 30.56 | MC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 19.38 | MC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 21.45 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 31.86 | MC |
| SRR10690144 | leaf | IR24_0h | 21.04 | MC |
| SRR10690142 | leaf | IR24_0h | 24.52 | MC |
| SRR1061623 | flag_leaf | Heat Stress | 76.77 | MC |
| SRR1061622 | flag_leaf | Normal | 404.98 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 286.36 | MC |
| SRR1061620 | flag_leaf | Normal | 389.54 | MC |
| SRR1061617 | panicle | Heat Stress | 54.06 | MC |
| SRR1061615 | panicle | Heat Stress | 62.62 | MC |
| SRR1013786 | flag_leaf | 93-11_FL | 52.44 | MC |
| SRR1013785 | flag_leaf | LYP9_FL | 20.93 | MC |
| SRR089621 | panicle | cold | 4.02 | MC |
| SRR089619 | panicle | control | 4.04 | MC |