| SRR9937395 | spikelet | sRNA basal spikelets | 13.55 | MC |
| SRR9937394 | spikelet | sRNA apical spikelets | 18.22 | MC |
| SRR976171 | lamina_joint | wild type | 44.29 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 8.94 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 6.54 | MC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 8.40 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 21.21 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 14.40 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 16.18 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 35.52 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 11.94 | MC |
| SRR8258059 | leaf_sheath | R_bph_late | 7.35 | MC |
| SRR8258058 | leaf_sheath | R_bph_late | 12.52 | MC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 12.70 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 23.67 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 35.08 | MC |
| SRR8258051 | leaf_sheath | R_bph | 31.86 | MC |
| SRR8258050 | leaf_sheath | R_bph | 36.52 | MC |
| SRR8258048 | leaf_sheath | R_bph | 10.78 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 9.26 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 134.62 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 62.31 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 18.93 | MC |
| SRR6810106 | panicle | panicle | 5.60 | MC |
| SRR6810104 | flag_leaf | flag_leaf | 3.33 | MC |
| SRR6810101 | seedling | seedling | 8.16 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 25.81 | MC |
| SRR6498701 | leaf | "WT, Control" | 11.62 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 43.96 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 21.80 | MC |
| SRR5940086 | panicle | Wild type | 3.26 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 4.66 | MC |
| SRR5120084 | leaf_sheath | P15_48 | 14.71 | MC |
| SRR5120083 | leaf_sheath | P15_6 | 10.27 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 12.63 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 8.51 | MC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 20.58 | MC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 4.13 | MC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 9.97 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 7.99 | MC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 6.27 | MC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 8.48 | MC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 7.75 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 2.29 | MC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 9.54 | MC |
| SRR5049781 | anther | floret length/mm: >6.5 | 6.09 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 7.69 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 8.06 | MC |
| SRR4098209 | leaf | No treatment | 36.37 | MC |
| SRR4098208 | root | No treatment | 18.00 | MC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 26.05 | MC |
| SRR4098205 | seedling | Heat (50C) | 21.55 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 11.50 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 25.71 | MC |
| SRR4098172 | seedling | Cold (4C) | 31.26 | MC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 8.75 | MC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 11.14 | MC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 23.58 | MC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 17.63 | MC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 6.53 | MC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 8.88 | MC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 10.20 | MC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 13.81 | MC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 11.26 | MC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 9.67 | MC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 21.83 | MC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 26.16 | MC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 17.36 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 6.65 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 6.72 | MC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 13.80 | MC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 8.20 | MC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 12.05 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 12.21 | MC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 7.16 | MC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 10.78 | MC |
| SRR3203907 | leaf | WT | 19.82 | MC |
| SRR3140957 | leaf | "45C, 24h" | 15.74 | MC |
| SRR3140956 | leaf | "45C, 24h" | 8.92 | MC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 10.17 | MC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 8.69 | MC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 16.60 | MC |
| SRR3130370 | leaf | control 8 hour | 6.89 | MC |
| SRR3130369 | leaf | control 8 hour | 8.22 | MC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 8.47 | MC |
| SRR3130366 | leaf | control 0 hour | 14.70 | MC |
| SRR3110557 | shoot | shoot treated | 17.14 | MC |
| SRR3110556 | shoot | shoot control | 38.42 | MC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 4.83 | MC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 28.18 | MC |
| SRR2862365 | leaf | mock leaf cells | 5.23 | MC |
| SRR2862364 | leaf | mock leaf cells | 15.61 | MC |
| SRR2862363 | leaf | mock leaf cells | 23.88 | MC |
| SRR2646855 | panicle | SP | 4.77 | MC |
| SRR2646854 | panicle | SP | 6.04 | MC |
| SRR2646853 | panicle | FP | 17.01 | MC |
| SRR2646852 | panicle | FP | 14.40 | MC |
| SRR2544787 | embryo | 12 hours imbibition | 6.58 | MC |
| SRR2544786 | embryo | dry seed | 2.98 | MC |
| SRR1849784 | root | Control 120min | 5.23 | MC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 9.43 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 14.91 | MC |
| SRR1849773 | leaf | Control 120min | 17.02 | MC |
| SRR1849772 | leaf | Control 120min | 11.60 | MC |
| SRR1849771 | leaf | Control 120min | 19.76 | MC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 13.71 | MC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 15.69 | MC |
| SRR1849767 | leaf | Control 30min | 9.52 | MC |
| SRR1849765 | leaf | Control 30min | 12.17 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 2.33 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 7.33 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 4.88 | MC |
| SRR1740025 | seedling | PK-Control | 2.30 | MC |
| SRR1654490 | leaf | wild type | 20.69 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 15.47 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 32.92 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 16.53 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 14.78 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 30.56 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 14.74 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 17.08 | MC |
| SRR12416742 | blade | sRNA_Blade_S2 | 12.02 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 12.44 | MC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 9.36 | MC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 8.86 | MC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 8.02 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 15.18 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 21.42 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 20.80 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 17.54 | MC |
| SRR10956502 | panicle | WT | 3.11 | MC |
| SRR10956501 | panicle | WT | 3.20 | MC |
| SRR10704060 | leaf | Glyphosate | 12.28 | MC |
| SRR10704058 | leaf | Glyphosate | 37.64 | MC |
| SRR10704057 | leaf | CK | 20.19 | MC |
| SRR10704056 | leaf | CK | 10.91 | MC |
| SRR10704055 | leaf | CK | 10.71 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 47.51 | MC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 16.03 | MC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 30.41 | MC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 17.80 | MC |
| SRR10690153 | leaf | IRBB5_0h | 32.64 | MC |
| SRR10690152 | leaf | IRBB5_0h | 24.18 | MC |
| SRR10690151 | leaf | IRBB5_0h | 16.71 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 24.52 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 12.09 | MC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 9.60 | MC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 9.89 | MC |
| SRR10690144 | leaf | IR24_0h | 34.89 | MC |
| SRR10690143 | leaf | IR24_0h | 18.03 | MC |
| SRR10690142 | leaf | IR24_0h | 29.89 | MC |
| SRR1061612 | panicle | Normal | 4.23 | MC |
| SRR1013788 | panicle | LYP9_PA | 4.83 | MC |
| SRR089622 | panicle | salt | 17.32 | MC |
| SRR089620 | panicle | drought | 19.36 | MC |
| SRR089619 | panicle | control | 20.99 | MC |