| SRR9937395 | spikelet | sRNA basal spikelets | 16.70 | MC |
| SRR9937394 | spikelet | sRNA apical spikelets | 15.35 | MC |
| SRR976171 | lamina_joint | wild type | 273.55 | MC |
| SRR9070101 | shoot_base | WT_base | 17.28 | MC |
| SRR9070100 | shoot_base | WT_base | 8.01 | MC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 22.02 | MC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 9.92 | MC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 18.64 | MC |
| SRR8258065 | leaf_sheath | S_bph feeding | 18.30 | MC |
| SRR8258063 | leaf_sheath | S_bph feeding | 48.09 | MC |
| SRR8258061 | leaf_sheath | S_bph feeding | 24.88 | MC |
| SRR8258060 | leaf_sheath | R_bph_late | 26.25 | MC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 43.40 | MC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 22.95 | MC |
| SRR8258051 | leaf_sheath | R_bph | 12.82 | MC |
| SRR8258050 | leaf_sheath | R_bph | 24.08 | MC |
| SRR8258048 | leaf_sheath | R_bph | 8.84 | MC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 19.24 | MC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 5.00 | MC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 106.45 | MC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 43.50 | MC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 36.72 | MC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 17.50 | MC |
| SRR7058098 | leaf | rice_RSV | 131.34 | MC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 106.54 | MC |
| SRR6498701 | leaf | "WT, Control" | 139.48 | MC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 206.20 | MC |
| SRR6498699 | leaf | "WT, Control" | 96.84 | MC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 215.60 | MC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 17.08 | MC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 31.30 | MC |
| SRR5120082 | leaf_sheath | P15_0 | 127.50 | MC |
| SRR5120081 | leaf_sheath | PC_48 | 168.10 | MC |
| SRR5120080 | leaf_sheath | PC_6 | 168.15 | MC |
| SRR5120079 | leaf_sheath | PC_0 | 214.60 | MC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 30.36 | MC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 66.96 | MC |
| SRR5049785 | anther | floret length/mm: >7.0 | 11.70 | MC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 17.61 | MC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 18.69 | MC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 15.38 | MC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 27.88 | MC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 15.12 | MC |
| SRR504362 | leaf | NPB X 93-11 | 61.96 | MC |
| SRR447134 | shoot | As(III) 80 uM | 5.38 | MC |
| SRR4098209 | leaf | No treatment | 19.08 | MC |
| SRR4098208 | root | No treatment | 10.04 | MC |
| SRR4098205 | seedling | Heat (50C) | 29.86 | MC |
| SRR4098204 | seedling | Drought (air-dried) | 18.76 | MC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 74.50 | MC |
| SRR4098172 | seedling | Cold (4C) | 17.30 | MC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 23.24 | MC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 24.10 | MC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 13.12 | MC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 37.04 | MC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 46.64 | MC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 25.08 | MC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 58.88 | MC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 15.90 | MC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 269.20 | MC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 214.90 | MC |
| SRR3130366 | leaf | control 0 hour | 315.42 | MC |
| SRR3130365 | leaf | control 0 hour | 109.08 | MC |
| SRR3110556 | shoot | shoot control | 183.50 | MC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 238.00 | MC |
| SRR2646852 | panicle | FP | 8.94 | MC |
| SRR2544788 | embryo | 24 hours imbibition | 26.75 | MC |
| SRR2154080 | seedling | Nipponbare_seedling | 232.52 | MC |
| SRR2154077 | seedling | KDM105_seedling | 374.24 | MC |
| SRR1849784 | root | Control 120min | 11.50 | MC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 14.50 | MC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 378.00 | MC |
| SRR1849773 | leaf | Control 120min | 71.90 | MC |
| SRR1849772 | leaf | Control 120min | 106.26 | MC |
| SRR1849771 | leaf | Control 120min | 313.75 | MC |
| SRR1849767 | leaf | Control 30min | 74.36 | MC |
| SRR1849765 | leaf | Control 30min | 173.01 | MC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 15.84 | MC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 16.16 | MC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 8.07 | MC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 9.00 | MC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 12.40 | MC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 11.50 | MC |
| SRR1742990 | endosperm | 4X_En_sRNA | 30.55 | MC |
| SRR1742989 | endosperm | 4X_En_sRNA | 43.04 | MC |
| SRR1742988 | endosperm | 4X_En_sRNA | 26.24 | MC |
| SRR1612403 | leaf | WT wild type (miRNA) | 17.92 | MC |
| SRR12416749 | blade | sRNA_Blade_S5 | 17.16 | MC |
| SRR12416748 | blade | sRNA_Blade_S5 | 15.00 | MC |
| SRR12416747 | blade | sRNA_Blade_S4 | 12.90 | MC |
| SRR12416746 | blade | sRNA_Blade_S4 | 8.92 | MC |
| SRR12416745 | blade | sRNA_Blade_S3 | 18.30 | MC |
| SRR12416744 | blade | sRNA_Blade_S3 | 18.00 | MC |
| SRR12416743 | blade | sRNA_Blade_S2 | 7.95 | MC |
| SRR12416741 | blade | sRNA_Blade_S1 | 10.05 | MC |
| SRR12416740 | blade | sRNA_Blade_S1 | 15.00 | MC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 15.30 | MC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 11.60 | MC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 14.20 | MC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 18.90 | MC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 8.10 | MC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 17.46 | MC |
| SRR10704058 | leaf | Glyphosate | 12.36 | MC |
| SRR10704056 | leaf | CK | 7.28 | MC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 13.26 | MC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 6.16 | MC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 18.08 | MC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 10.28 | MC |
| SRR10690151 | leaf | IRBB5_0h | 12.25 | MC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 15.96 | MC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 11.46 | MC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 9.33 | MC |
| SRR10690144 | leaf | IR24_0h | 17.49 | MC |
| SRR10690142 | leaf | IR24_0h | 23.58 | MC |
| SRR1061622 | flag_leaf | Normal | 11.91 | MC |
| SRR1061621 | flag_leaf | Heat Stress | 17.04 | MC |
| SRR1061617 | panicle | Heat Stress | 15.95 | MC |
| SRR1061616 | panicle | Normal | 21.30 | MC |
| SRR1061615 | panicle | Heat Stress | 12.10 | MC |
| SRR1013784 | flag_leaf | PA64s_FL | 3.75 | MC |
| SRR089619 | panicle | control | 50.50 | MC |