| SRR4457257 | 2nd_leaf | DAH20 | 0.88 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.59 | MC |
| SRR358795 | callus | wt | 2.31 | MC |
| SRR358796 | callus | wt | 3.29 | MC |
| SRR358797 | callus | wt | 2.43 | MC |
| SRR358798 | callus | wt | 2.29 | MC |
| SRR5560727 | caryopsis | wild_type | 1.06 | MC |
| SRR5560728 | caryopsis | wild_type | 0.93 | MC |
| SRR5560729 | caryopsis | wild_type | 1.33 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.63 | MC |
| SRR7265400 | coleoptile | 2dA | 1.89 | MC |
| SRR7265401 | coleoptile | 2dA | 1.79 | MC |
| SRR7265402 | coleoptile | 2dA | 1.34 | MC |
| SRR7265403 | coleoptile | 2dN | 2.17 | MC |
| SRR7265404 | coleoptile | 2dN | 1.93 | MC |
| SRR7265405 | coleoptile | 2dN | 2.32 | MC |
| SRR7265409 | coleoptile | 3dN | 1.08 | MC |
| SRR7265415 | coleoptile | 4dN | 1.14 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.35 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.42 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265376 | embryo | 1hA | 1.21 | MC |
| SRR7265377 | embryo | 1hA | 1.02 | MC |
| SRR7265378 | embryo | 1hA | 1.34 | MC |
| SRR7265379 | embryo | 1hN | 0.98 | MC |
| SRR7265380 | embryo | 1hN | 1.26 | MC |
| SRR7265381 | embryo | 1hN | 1.37 | MC |
| SRR7265382 | embryo | 3hA | 1.80 | MC |
| SRR7265383 | embryo | 3hA | 1.70 | MC |
| SRR7265384 | embryo | 3hA | 1.34 | MC |
| SRR7265385 | embryo | 3hN | 0.91 | MC |
| SRR7265386 | embryo | 3hN | 1.51 | MC |
| SRR7265387 | embryo | 3hN | 1.48 | MC |
| SRR7265388 | embryo | 12hA | 3.33 | MC |
| SRR7265389 | embryo | 12hA | 3.65 | MC |
| SRR7265390 | embryo | 12hA | 3.28 | MC |
| SRR7265391 | embryo | 12hN | 3.27 | MC |
| SRR7265392 | embryo | 12hN | 3.03 | MC |
| SRR7265393 | embryo | 12hN | 3.07 | MC |
| SRR7265394 | embryo | 24hA | 2.78 | MC |
| SRR7265395 | embryo | 24hA | 3.20 | MC |
| SRR7265396 | embryo | 24hA | 2.99 | MC |
| SRR7265397 | embryo | 24hN | 3.55 | MC |
| SRR7265398 | embryo | 24hN | 3.65 | MC |
| SRR7265399 | embryo | 24hN | 3.19 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.41 | MC |
| SRR1213691 | flower | wt | 1.35 | MC |
| SRR8060835 | leaf | wild_type | 0.69 | MC |
| SRR8060836 | leaf | wild_type | 0.78 | MC |
| SRR8060837 | leaf | wild_type | 0.60 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.59 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.49 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.41 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.57 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.42 | MC |
| SRR504365 | leaf | wt | 2.53 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.62 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.03 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.98 | MC |
| SRR1213692 | leaf | wt | 0.98 | MC |
| SRR1213693 | leaf | wt | 0.63 | MC |
| SRR5856937 | leaf | salt | 0.37 | MC |
| SRR6168973 | leaf | none (control) | 1.18 | MC |
| SRR6168974 | leaf | none (control) | 1.44 | MC |
| SRR8582891 | panicle | PM | 2.44 | MC |
| SRR8582892 | panicle | PM | 4.48 | MC |
| SRR8582893 | panicle | PM | 2.64 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.56 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.42 | MC |
| SRR5110445 | panicle | Dusk | 1.22 | MC |
| SRR5110446 | panicle | Dusk | 1.79 | MC |
| SRR5110447 | panicle | Dusk | 1.30 | MC |
| SRR5110448 | panicle | Dusk | 1.44 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.29 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.40 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.07 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.92 | MC |
| SRR1633182 | panicle | WT | 0.43 | MC |
| SRR1633185 | panicle | WT | 0.64 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.20 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.46 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.42 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.08 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.42 | MC |
| SRR5126147 | root | "mock,1_day" | 0.71 | MC |
| SRR5126148 | root | "mock,1_day" | 0.61 | MC |
| SRR5126149 | root | "mock,1_day" | 0.46 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.61 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.04 | MC |
| SRR5126153 | root | "mock,7_days" | 0.55 | MC |
| SRR5126155 | root | "mock,7_days" | 0.56 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.00 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.91 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.92 | MC |
| SRR5126165 | root | "mock,14_days" | 0.43 | MC |
| SRR5126167 | root | "mock,14_days" | 0.54 | MC |
| SRR5126169 | root | "mock,14_days" | 0.37 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.42 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.79 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.73 | MC |
| SRR1213694 | root | wt | 0.56 | MC |
| SRR1213695 | root | wt | 0.62 | MC |
| SRR4947479 | root | control | 0.94 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.74 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502094 | root | control | 0.51 | MC |
| SRR6502095 | root | control | 0.51 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502106 | root | control | 0.40 | MC |
| SRR6502107 | root | control | 0.42 | MC |
| SRR6502108 | root | control | 0.68 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.55 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.23 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.48 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.76 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.67 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.69 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.38 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.79 | MC |
| SRR2154087 | seedling | wt | 0.77 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.96 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.77 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.99 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.79 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.42 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.19 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.13 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.28 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.20 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.01 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.40 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.39 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.64 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.66 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.65 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.44 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.28 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.84 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.87 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.28 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.55 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.81 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.86 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.70 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.43 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.41 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.74 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.23 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.56 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.73 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.38 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.11 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.48 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.27 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.51 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.21 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.62 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.01 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.07 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.02 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 6.06 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 5.48 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 6.21 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.08 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.21 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.74 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.08 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.51 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.12 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.32 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.61 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.38 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.18 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.41 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.78 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |