| SRR4457249 | 2nd_leaf | DAH4 | 4.75 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.63 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 4.70 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.73 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.85 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 4.29 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.56 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.71 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.84 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.28 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.47 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 5.73 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.20 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.06 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 6.04 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.43 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.78 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.48 | MC |
| SRR5560727 | caryopsis | wild_type | 6.94 | MC |
| SRR5560728 | caryopsis | wild_type | 4.75 | MC |
| SRR5560729 | caryopsis | wild_type | 3.28 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.70 | MC |
| SRR4457231 | flag_leaf | DAH4 | 5.78 | MC |
| SRR4457232 | flag_leaf | DAH4 | 4.06 | MC |
| SRR4457233 | flag_leaf | DAH4 | 3.76 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.70 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.37 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.98 | MC |
| SRR4457237 | flag_leaf | DAH20 | 4.17 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.89 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.00 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.94 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.03 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.99 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.91 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.23 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.56 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.19 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.36 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.23 | MC |
| SRR8060835 | leaf | wild_type | 10.14 | MC |
| SRR8060836 | leaf | wild_type | 9.60 | MC |
| SRR8060837 | leaf | wild_type | 10.38 | MC |
| SRR8240824 | leaf | wild_type | 4.35 | MC |
| SRR8240825 | leaf | wild_type | 5.29 | MC |
| SRR8240826 | leaf | wild_type | 3.51 | MC |
| SRR8240818 | leaf | wild_type | 1.22 | MC |
| SRR8240819 | leaf | wild_type | 1.73 | MC |
| SRR8240820 | leaf | wild_type | 2.55 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.69 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.81 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.16 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.03 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.35 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.05 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.83 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.60 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.50 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.17 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.57 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.93 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.17 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.26 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.21 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.77 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.99 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.77 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.99 | MC |
| SRR1761530 | leaf | control | 2.77 | MC |
| SRR1761531 | leaf | control | 0.99 | MC |
| SRR504365 | leaf | wt | 3.75 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.40 | MC |
| SRR6417967 | leaf | H2O_control | 2.63 | MC |
| SRR6417968 | leaf | H2O_control | 1.66 | MC |
| SRR6417969 | leaf | H2O_control | 3.39 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.75 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.87 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.64 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.50 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.53 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.94 | MC |
| SRR8611902 | leaf | Non-inoculated | 4.44 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.56 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.13 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.02 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.64 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.41 | MC |
| SRR1213692 | leaf | wt | 4.56 | MC |
| SRR1213693 | leaf | wt | 2.22 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.42 | MC |
| SRR6502090 | leaf | control | 1.75 | MC |
| SRR6502102 | leaf | control | 0.69 | MC |
| SRR5856927 | leaf | control | 0.34 | MC |
| SRR5856933 | leaf | control | 0.80 | MC |
| SRR5856938 | leaf | salt | 0.28 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 6.62 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 7.08 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.57 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 6.04 | MC |
| SRR6168973 | leaf | none (control) | 10.05 | MC |
| SRR6168974 | leaf | none (control) | 10.00 | MC |
| SRR6168975 | leaf | none (control) | 11.69 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.91 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 8.59 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.14 | MC |
| SRR8582888 | panicle | AM | 4.72 | MC |
| SRR8582889 | panicle | AM | 3.70 | MC |
| SRR8582890 | panicle | AM | 2.86 | MC |
| SRR8582891 | panicle | PM | 5.16 | MC |
| SRR8582892 | panicle | PM | 8.66 | MC |
| SRR8582893 | panicle | PM | 10.26 | MC |
| SRR5110429 | panicle | Dawn | 1.53 | MC |
| SRR5110430 | panicle | Dawn | 2.79 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.65 | MC |
| SRR5110445 | panicle | Dusk | 2.18 | MC |
| SRR5110446 | panicle | Dusk | 2.35 | MC |
| SRR5110447 | panicle | Dusk | 1.42 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.09 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.68 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.07 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.82 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.03 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.86 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.22 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.78 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.15 | MC |
| SRR5126155 | root | "mock,7_days" | 0.30 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR1213695 | root | wt | 1.05 | MC |
| SRR6441554 | seedling | wild_type | 1.48 | MC |
| SRR6441555 | seedling | wild_type | 3.68 | MC |
| SRR2154086 | seedling | wt | 3.84 | MC |
| SRR2154082 | seedling | wt | 4.09 | MC |
| SRR2154083 | seedling | wt | 1.46 | MC |
| SRR2154084 | seedling | wt | 1.79 | MC |
| SRR2154085 | seedling | wt | 1.62 | MC |
| SRR2154087 | seedling | wt | 3.12 | MC |
| SRR3098741 | seedling | wt | 5.43 | MC |
| SRR3098742 | seedling | wt | 6.39 | MC |
| SRR3098743 | seedling | wt | 7.05 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.67 | MC |
| SRR1944583 | seedling | no_treatment | 2.14 | MC |
| SRR358793 | seedling | wt | 1.33 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.80 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.33 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.41 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.50 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.94 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.87 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.51 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.65 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.08 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.63 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.01 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.41 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.14 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.53 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.98 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.85 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 17.80 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.85 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.47 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.06 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.40 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.60 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.47 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.67 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.36 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.51 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.87 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.71 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.81 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.93 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.99 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.64 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.72 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.53 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.17 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.81 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.43 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.63 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.87 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.11 | MC |