| SRR3745125 | anther | wt | 2.60 | MC |
| SRR3745126 | anther | wt | 1.55 | MC |
| SRR3745127 | anther | wt | 1.09 | MC |
| SRR5560728 | caryopsis | wild_type | 1.64 | MC |
| SRR5560729 | caryopsis | wild_type | 4.57 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 9.11 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 9.69 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 7.56 | MC |
| SRR7265400 | coleoptile | 2dA | 2.29 | MC |
| SRR7265401 | coleoptile | 2dA | 2.18 | MC |
| SRR7265402 | coleoptile | 2dA | 1.75 | MC |
| SRR7265403 | coleoptile | 2dN | 0.76 | MC |
| SRR7265404 | coleoptile | 2dN | 0.51 | MC |
| SRR7265405 | coleoptile | 2dN | 0.53 | MC |
| SRR7265406 | coleoptile | 3dA | 3.68 | MC |
| SRR7265407 | coleoptile | 3dA | 3.36 | MC |
| SRR7265408 | coleoptile | 3dA | 2.59 | MC |
| SRR7265409 | coleoptile | 3dN | 1.95 | MC |
| SRR7265410 | coleoptile | 3dN | 1.28 | MC |
| SRR7265411 | coleoptile | 3dN | 1.67 | MC |
| SRR7265413 | coleoptile | 4dA | 1.20 | MC |
| SRR7265415 | coleoptile | 4dN | 1.58 | MC |
| SRR7265416 | coleoptile | 4dN | 1.32 | MC |
| SRR7265417 | coleoptile | 4dN | 1.31 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 4.81 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.74 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.79 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.50 | MC |
| SRR7265388 | embryo | 12hA | 3.47 | MC |
| SRR7265389 | embryo | 12hA | 3.97 | MC |
| SRR7265390 | embryo | 12hA | 4.08 | MC |
| SRR7265391 | embryo | 12hN | 1.25 | MC |
| SRR7265392 | embryo | 12hN | 1.69 | MC |
| SRR7265393 | embryo | 12hN | 1.34 | MC |
| SRR7265394 | embryo | 24hA | 4.83 | MC |
| SRR7265395 | embryo | 24hA | 3.35 | MC |
| SRR7265396 | embryo | 24hA | 3.17 | MC |
| SRR7265397 | embryo | 24hN | 1.01 | MC |
| SRR7265398 | embryo | 24hN | 1.03 | MC |
| SRR7265399 | embryo | 24hN | 0.74 | MC |
| SRR2338869 | endosprem | high_temperature | 1.26 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.24 | MC |
| SRR1213691 | flower | wt | 1.89 | MC |
| SRR8060836 | leaf | wild_type | 0.46 | MC |
| SRR8240824 | leaf | wild_type | 0.96 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.71 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.01 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.92 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.39 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.77 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.37 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.45 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502088 | leaf | control | 0.92 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.55 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.67 | MC |
| SRR6502100 | leaf | control | 2.84 | MC |
| SRR6502101 | leaf | control | 1.55 | MC |
| SRR6502102 | leaf | control | 2.34 | MC |
| SRR6168973 | leaf | none (control) | 3.07 | MC |
| SRR6168974 | leaf | none (control) | 2.18 | MC |
| SRR6168975 | leaf | none (control) | 1.52 | MC |
| SRR8582888 | panicle | AM | 1.90 | MC |
| SRR8582889 | panicle | AM | 0.71 | MC |
| SRR8582890 | panicle | AM | 1.07 | MC |
| SRR8582891 | panicle | PM | 1.52 | MC |
| SRR8582893 | panicle | PM | 1.39 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.16 | MC |
| SRR1633182 | panicle | WT | 1.45 | MC |
| SRR1633185 | panicle | WT | 3.86 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.32 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.43 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.45 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.68 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.49 | MC |
| SRR5126147 | root | "mock,1_day" | 1.84 | MC |
| SRR5126148 | root | "mock,1_day" | 2.45 | MC |
| SRR5126149 | root | "mock,1_day" | 1.08 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.32 | MC |
| SRR5126155 | root | "mock,7_days" | 0.31 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.47 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.69 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.73 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.15 | MC |
| SRR1740435 | root_differentiation_zone | wt | 5.22 | MC |
| SRR1740436 | root_differentiation_zone | wt | 4.83 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.27 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.23 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.79 | MC |
| SRR6441554 | seedling | wild_type | 1.08 | MC |
| SRR6441555 | seedling | wild_type | 1.15 | MC |
| SRR2154086 | seedling | wt | 2.15 | MC |
| SRR2154083 | seedling | wt | 1.99 | MC |
| SRR2154084 | seedling | wt | 1.02 | MC |
| SRR2154085 | seedling | wt | 1.53 | MC |
| SRR2154087 | seedling | wt | 1.81 | MC |
| SRR3098741 | seedling | wt | 3.68 | MC |
| SRR3098742 | seedling | wt | 6.99 | MC |
| SRR3098743 | seedling | wt | 3.86 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.59 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.55 | MC |
| SRR1944583 | seedling | no_treatment | 0.64 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.69 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.27 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.32 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.35 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.98 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.95 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.77 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.41 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.42 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.41 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.66 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.38 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.78 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.28 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.22 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.94 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.20 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.87 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.76 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.14 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.43 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.18 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.00 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.74 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.41 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.13 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.15 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.67 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.24 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.61 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.43 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.96 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.65 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.27 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.50 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.32 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.60 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.63 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.98 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.22 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.78 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.34 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.62 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.16 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.68 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.87 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.63 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.20 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.21 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.45 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.89 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.70 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.56 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.81 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.82 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.44 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.62 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |