| SRR5560729 | caryopsis | wild_type | 0.28 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.54 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.68 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.87 | MC |
| SRR7265400 | coleoptile | 2dA | 0.50 | MC |
| SRR7265401 | coleoptile | 2dA | 0.42 | MC |
| SRR7265402 | coleoptile | 2dA | 0.56 | MC |
| SRR7265403 | coleoptile | 2dN | 0.42 | MC |
| SRR7265405 | coleoptile | 2dN | 0.37 | MC |
| SRR7265406 | coleoptile | 3dA | 0.72 | MC |
| SRR7265408 | coleoptile | 3dA | 0.51 | MC |
| SRR7265410 | coleoptile | 3dN | 0.42 | MC |
| SRR7265411 | coleoptile | 3dN | 0.34 | MC |
| SRR7265415 | coleoptile | 4dN | 0.66 | MC |
| SRR7265397 | embryo | 24hN | 0.74 | MC |
| SRR1213691 | flower | wt | 0.56 | MC |
| SRR8240824 | leaf | wild_type | 0.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.74 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.41 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.44 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.87 | MC |
| SRR6502100 | leaf | control | 0.39 | MC |
| SRR5856929 | leaf | control | 0.27 | MC |
| SRR5856930 | leaf | salt | 1.42 | MC |
| SRR5856931 | leaf | salt | 0.48 | MC |
| SRR5856932 | leaf | salt | 0.49 | MC |
| SRR5856933 | leaf | control | 0.43 | MC |
| SRR5856934 | leaf | control | 0.47 | MC |
| SRR5856935 | leaf | control | 0.94 | MC |
| SRR5856936 | leaf | salt | 1.32 | MC |
| SRR5856937 | leaf | salt | 0.74 | MC |
| SRR5856938 | leaf | salt | 1.06 | MC |
| SRR6168973 | leaf | none (control) | 2.37 | MC |
| SRR6168974 | leaf | none (control) | 2.20 | MC |
| SRR6168975 | leaf | none (control) | 0.60 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.55 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.22 | MC |
| SRR4947496 | root | control | 1.35 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.64 | MC |
| SRR1633182 | panicle | WT | 0.52 | MC |
| SRR1633185 | panicle | WT | 0.31 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.01 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.53 | MC |
| SRR5126148 | root | "mock,1_day" | 0.76 | MC |
| SRR5126149 | root | "mock,1_day" | 0.75 | MC |
| SRR5126153 | root | "mock,7_days" | 0.30 | MC |
| SRR5126155 | root | "mock,7_days" | 1.18 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126167 | root | "mock,14_days" | 0.41 | MC |
| SRR5126169 | root | "mock,14_days" | 0.35 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.41 | MC |
| SRR1213694 | root | wt | 0.41 | MC |
| SRR4947480 | root | control | 1.53 | MC |
| SRR4947481 | root | control | 1.12 | MC |
| SRR4947484 | root | Al | 0.60 | MC |
| SRR4947485 | root | Al | 0.65 | MC |
| SRR4947488 | root | control | 1.37 | MC |
| SRR4947489 | root | control | 1.14 | MC |
| SRR4947494 | root | control | 0.80 | MC |
| SRR4947497 | root | control | 1.15 | MC |
| SRR4947500 | root | Al | 0.62 | MC |
| SRR4947504 | root | control | 0.48 | MC |
| SRR4947505 | root | control | 1.14 | MC |
| SRR4947506 | root | Al | 0.62 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.44 | MC |
| SRR6502094 | root | control | 0.90 | MC |
| SRR6502095 | root | control | 0.85 | MC |
| SRR6502096 | root | control | 1.27 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.83 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.35 | MC |
| SRR6502106 | root | control | 0.41 | MC |
| SRR6502107 | root | control | 0.66 | MC |
| SRR6502108 | root | control | 0.48 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.19 | MC |
| SRR6441554 | seedling | wild_type | 0.56 | MC |
| SRR2154086 | seedling | wt | 0.89 | MC |
| SRR2154085 | seedling | wt | 0.99 | MC |
| SRR2154087 | seedling | wt | 1.02 | MC |
| SRR3098741 | seedling | wt | 0.67 | MC |
| SRR3098742 | seedling | wt | 0.98 | MC |
| SRR3098743 | seedling | wt | 1.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.60 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.74 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.29 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.69 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.93 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.77 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.18 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.76 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.69 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.33 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.30 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.39 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.81 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.67 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.55 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.75 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.30 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.70 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.80 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.97 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.80 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.69 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.80 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.91 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.95 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.52 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.52 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.70 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.79 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.05 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.24 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.13 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.59 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.57 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.22 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.34 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.29 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.56 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.41 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.14 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.71 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.45 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.42 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.79 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.71 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.54 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.94 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.00 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.74 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.21 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.99 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.10 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.96 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.21 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.88 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.41 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |