| SRR4457249 | 2nd_leaf | DAH4 | 0.56 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.69 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.43 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.37 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.52 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.59 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.28 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.51 | MC |
| SRR7265400 | coleoptile | 2dA | 0.49 | MC |
| SRR7265401 | coleoptile | 2dA | 0.65 | MC |
| SRR7265402 | coleoptile | 2dA | 1.36 | MC |
| SRR7265403 | coleoptile | 2dN | 0.61 | MC |
| SRR7265405 | coleoptile | 2dN | 0.84 | MC |
| SRR7265406 | coleoptile | 3dA | 1.14 | MC |
| SRR7265409 | coleoptile | 3dN | 0.51 | MC |
| SRR7265410 | coleoptile | 3dN | 0.32 | MC |
| SRR7265412 | coleoptile | 4dA | 0.50 | MC |
| SRR7265413 | coleoptile | 4dA | 1.10 | MC |
| SRR7265415 | coleoptile | 4dN | 0.76 | MC |
| SRR7265417 | coleoptile | 4dN | 0.99 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.49 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.16 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.63 | MC |
| SRR7265376 | embryo | 1hA | 0.61 | MC |
| SRR7265378 | embryo | 1hA | 0.69 | MC |
| SRR7265381 | embryo | 1hN | 0.56 | MC |
| SRR7265382 | embryo | 3hA | 0.76 | MC |
| SRR7265383 | embryo | 3hA | 0.82 | MC |
| SRR7265384 | embryo | 3hA | 0.74 | MC |
| SRR7265386 | embryo | 3hN | 0.37 | MC |
| SRR7265387 | embryo | 3hN | 0.31 | MC |
| SRR7265389 | embryo | 12hA | 1.45 | MC |
| SRR7265390 | embryo | 12hA | 1.07 | MC |
| SRR7265393 | embryo | 12hN | 0.83 | MC |
| SRR7265398 | embryo | 24hN | 1.00 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.34 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.18 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.22 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.53 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.57 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.66 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.48 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.16 | MC |
| SRR1213691 | flower | wt | 2.81 | MC |
| SRR8060835 | leaf | wild_type | 0.27 | MC |
| SRR8060836 | leaf | wild_type | 0.30 | MC |
| SRR8060837 | leaf | wild_type | 0.34 | MC |
| SRR8240825 | leaf | wild_type | 0.39 | MC |
| SRR8240826 | leaf | wild_type | 0.50 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.41 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.80 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.43 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.64 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.54 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.76 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.45 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.47 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.47 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.47 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.48 | MC |
| SRR1761530 | leaf | control | 0.47 | MC |
| SRR1761531 | leaf | control | 0.48 | MC |
| SRR504365 | leaf | wt | 0.32 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.29 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.33 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.26 | MC |
| SRR1213692 | leaf | wt | 0.43 | MC |
| SRR1213693 | leaf | wt | 0.53 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.63 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.36 | MC |
| SRR5856927 | leaf | control | 1.18 | MC |
| SRR5856928 | leaf | control | 0.88 | MC |
| SRR5856929 | leaf | control | 0.90 | MC |
| SRR5856933 | leaf | control | 0.82 | MC |
| SRR5856934 | leaf | control | 1.01 | MC |
| SRR5856935 | leaf | control | 0.77 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR8582888 | panicle | AM | 0.44 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR8582890 | panicle | AM | 0.28 | MC |
| SRR8582891 | panicle | PM | 0.54 | MC |
| SRR8582893 | panicle | PM | 0.24 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR1633182 | panicle | WT | 1.58 | MC |
| SRR1633185 | panicle | WT | 3.47 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.43 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.43 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.90 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.29 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.36 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.31 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.79 | MC |
| SRR1213694 | root | wt | 0.82 | MC |
| SRR1213695 | root | wt | 0.66 | MC |
| SRR4947480 | root | control | 0.60 | MC |
| SRR4947482 | root | Al | 0.50 | MC |
| SRR4947490 | root | Al | 0.59 | MC |
| SRR4947497 | root | control | 0.60 | MC |
| SRR4947501 | root | Al | 0.49 | MC |
| SRR4947506 | root | Al | 0.51 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.90 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.16 | MC |
| SRR6502095 | root | control | 0.39 | MC |
| SRR6502096 | root | control | 0.69 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.11 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502106 | root | control | 0.40 | MC |
| SRR6502108 | root | control | 1.19 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.63 | MC |
| SRR2154086 | seedling | wt | 0.38 | MC |
| SRR2154085 | seedling | wt | 0.55 | MC |
| SRR2154087 | seedling | wt | 0.39 | MC |
| SRR3098741 | seedling | wt | 0.29 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.52 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.39 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.24 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 4.41 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.03 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.87 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.70 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.27 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.94 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.90 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.03 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.03 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.25 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.63 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.73 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.31 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.51 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.58 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.45 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.49 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.39 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.56 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.23 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.18 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.53 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.61 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.96 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.73 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.05 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.81 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.54 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.89 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.61 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.80 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.72 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |