| SRR4457249 | 2nd_leaf | DAH4 | 2.20 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.12 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.97 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.46 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.77 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.50 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.04 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.31 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.33 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.04 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.17 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.85 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.43 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.07 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.40 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.16 | MC |
| SRR3745125 | anther | wt | 1.48 | MC |
| SRR3745126 | anther | wt | 1.47 | MC |
| SRR3745127 | anther | wt | 1.24 | MC |
| SRR358795 | callus | wt | 7.83 | MC |
| SRR358796 | callus | wt | 6.76 | MC |
| SRR358797 | callus | wt | 6.60 | MC |
| SRR358798 | callus | wt | 8.96 | MC |
| SRR6320473 | carpel | wt | 1.51 | MC |
| SRR5560727 | caryopsis | wild_type | 1.89 | MC |
| SRR5560728 | caryopsis | wild_type | 3.27 | MC |
| SRR5560729 | caryopsis | wild_type | 5.07 | MC |
| SRR4947495 | root | control | 2.59 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.42 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.36 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.76 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.84 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.57 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.54 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.95 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.76 | MC |
| SRR2338867 | endosprem | control | 0.59 | MC |
| SRR2338868 | endosprem | high_temperature | 0.44 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.01 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.39 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.69 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.62 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.61 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.45 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.06 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.04 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.15 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.47 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.61 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.04 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.26 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.50 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.54 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.06 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.63 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.18 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.91 | MC |
| SRR8240824 | leaf | wild_type | 2.61 | MC |
| SRR8240825 | leaf | wild_type | 1.90 | MC |
| SRR8240818 | leaf | wild_type | 0.39 | MC |
| SRR8240819 | leaf | wild_type | 1.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.91 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.77 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.59 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.36 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.60 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.07 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.06 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.36 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.11 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.70 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.25 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.49 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.75 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.78 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.29 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.78 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.92 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.20 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.47 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.89 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.06 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.39 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.02 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.21 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.46 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.63 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.02 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.21 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.46 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.63 | MC |
| SRR1761528 | leaf | drought | 2.02 | MC |
| SRR1761529 | leaf | drought | 1.21 | MC |
| SRR1761530 | leaf | control | 1.46 | MC |
| SRR1761531 | leaf | control | 2.63 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.36 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.67 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.04 | MC |
| SRR6417967 | leaf | H2O_control | 1.43 | MC |
| SRR6417968 | leaf | H2O_control | 1.31 | MC |
| SRR6417969 | leaf | H2O_control | 1.18 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.22 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.28 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.22 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.22 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.23 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.47 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.20 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.66 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.50 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.20 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.31 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.81 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.78 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.96 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.65 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.43 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.23 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.69 | MC |
| SRR6502088 | leaf | control | 3.06 | MC |
| SRR6502089 | leaf | control | 1.91 | MC |
| SRR6502090 | leaf | control | 3.22 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.04 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.95 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.50 | MC |
| SRR6502100 | leaf | control | 3.99 | MC |
| SRR6502102 | leaf | control | 2.89 | MC |
| SRR5856930 | leaf | salt | 0.78 | MC |
| SRR5856931 | leaf | salt | 1.61 | MC |
| SRR5856937 | leaf | salt | 0.94 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.95 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.53 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.88 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.25 | MC |
| SRR6168973 | leaf | none (control) | 1.48 | MC |
| SRR6168974 | leaf | none (control) | 0.92 | MC |
| SRR6168975 | leaf | none (control) | 1.06 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.78 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.44 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.04 | MC |
| SRR6168979 | leaf | none (control) | 0.86 | MC |
| SRR6168981 | leaf | none (control) | 0.30 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.79 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.93 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.89 | MC |
| SRR8582888 | panicle | AM | 0.37 | MC |
| SRR8582889 | panicle | AM | 0.47 | MC |
| SRR8582890 | panicle | AM | 0.88 | MC |
| SRR8582892 | panicle | PM | 3.96 | MC |
| SRR8582893 | panicle | PM | 4.13 | MC |
| SRR5110429 | panicle | Dawn | 3.12 | MC |
| SRR5110430 | panicle | Dawn | 1.84 | MC |
| SRR5110431 | panicle | Dawn | 1.54 | MC |
| SRR5110432 | panicle | Dawn | 2.86 | MC |
| SRR4947496 | root | control | 2.48 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.11 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.83 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.72 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.50 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.84 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.09 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.67 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.69 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.02 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.36 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.77 | MC |
| SRR5110445 | panicle | Dusk | 1.69 | MC |
| SRR5110446 | panicle | Dusk | 3.67 | MC |
| SRR5110447 | panicle | Dusk | 3.89 | MC |
| SRR5110448 | panicle | Dusk | 3.74 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.93 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.29 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.45 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.45 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.15 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.53 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.25 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.98 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.32 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.26 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.99 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.36 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.05 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.25 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.78 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.94 | MC |
| SRR4947478 | root | control | 3.95 | MC |
| SRR4947479 | root | control | 2.52 | MC |
| SRR4947480 | root | control | 2.94 | MC |
| SRR4947481 | root | control | 4.55 | MC |
| SRR4947483 | root | Al | 2.80 | MC |
| SRR4947484 | root | Al | 2.88 | MC |
| SRR4947485 | root | Al | 3.69 | MC |
| SRR4947487 | root | control | 2.40 | MC |
| SRR4947488 | root | control | 3.34 | MC |
| SRR4947489 | root | control | 4.90 | MC |
| SRR4947490 | root | Al | 3.43 | MC |
| SRR4947491 | root | Al | 4.36 | MC |
| SRR4947492 | root | Al | 3.46 | MC |
| SRR4947493 | root | Al | 1.64 | MC |
| SRR4947494 | root | control | 3.81 | MC |
| SRR4947497 | root | control | 4.65 | MC |
| SRR4947498 | root | Al | 5.09 | MC |
| SRR4947499 | root | Al | 3.46 | MC |
| SRR4947502 | root | control | 3.02 | MC |
| SRR4947503 | root | control | 3.83 | MC |
| SRR4947504 | root | control | 3.49 | MC |
| SRR4947506 | root | Al | 3.50 | MC |
| SRR4947507 | root | Al | 3.71 | MC |
| SRR4947508 | root | Al | 3.79 | MC |
| SRR4947509 | root | Al | 3.67 | MC |
| SRR6502094 | root | control | 3.67 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.78 | MC |
| SRR6502106 | root | control | 2.28 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.92 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.95 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.06 | MC |
| SRR6441554 | seedling | wild_type | 2.84 | MC |
| SRR2154083 | seedling | wt | 3.11 | MC |
| SRR2154085 | seedling | wt | 3.01 | MC |
| SRR2154087 | seedling | wt | 2.98 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.10 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.84 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.42 | MC |
| SRR1944583 | seedling | no_treatment | 2.26 | MC |
| SRR358791 | seedling | wt | 4.31 | MC |
| SRR358792 | seedling | wt | 3.99 | MC |
| SRR358793 | seedling | wt | 1.27 | MC |
| SRR358794 | seedling | wt | 1.81 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.87 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.78 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.08 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.05 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.24 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.91 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.88 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.72 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.35 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.54 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.12 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.65 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.55 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.93 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.98 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.93 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.40 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.89 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.26 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.95 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.83 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.30 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.35 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.08 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.07 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.28 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.29 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.51 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.70 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.50 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.03 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.64 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.93 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.97 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.69 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.57 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.97 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.93 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.13 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.94 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.10 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.56 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.28 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.91 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.58 | MC |