| SRR4457249 | 2nd_leaf | DAH4 | 0.73 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.66 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.72 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.36 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.50 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.84 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.72 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.67 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.43 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.24 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.32 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.90 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.98 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.86 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.06 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.93 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.95 | MC |
| SRR3745125 | anther | wt | 2.59 | MC |
| SRR3745126 | anther | wt | 4.96 | MC |
| SRR3745127 | anther | wt | 4.74 | MC |
| SRR358797 | callus | wt | 0.95 | MC |
| SRR6320473 | carpel | wt | 2.30 | MC |
| SRR6320498 | carpel | wt | 2.81 | MC |
| SRR5560727 | caryopsis | wild_type | 0.58 | MC |
| SRR5560728 | caryopsis | wild_type | 1.21 | MC |
| SRR5560729 | caryopsis | wild_type | 2.48 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR4947495 | root | control | 0.99 | MC |
| SRR7265412 | coleoptile | 4dA | 0.71 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.63 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.30 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.83 | MC |
| SRR2338868 | endosprem | high_temperature | 1.00 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.86 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.78 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.50 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.47 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.53 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.76 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.90 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.08 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.15 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.49 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.57 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.90 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.64 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.72 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.70 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.76 | MC |
| SRR1213691 | flower | wt | 1.05 | MC |
| SRR8240825 | leaf | wild_type | 1.22 | MC |
| SRR8240819 | leaf | wild_type | 0.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.50 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.43 | MC |
| SRR5856927 | leaf | control | 0.63 | MC |
| SRR5856928 | leaf | control | 0.91 | MC |
| SRR5856929 | leaf | control | 0.72 | MC |
| SRR5856930 | leaf | salt | 0.25 | MC |
| SRR5856931 | leaf | salt | 0.26 | MC |
| SRR5856932 | leaf | salt | 0.19 | MC |
| SRR5856933 | leaf | control | 0.76 | MC |
| SRR5856934 | leaf | control | 0.96 | MC |
| SRR5856935 | leaf | control | 0.27 | MC |
| SRR5856936 | leaf | salt | 0.31 | MC |
| SRR5856937 | leaf | salt | 0.44 | MC |
| SRR5856938 | leaf | salt | 0.82 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR8582889 | panicle | AM | 0.39 | MC |
| SRR8582891 | panicle | PM | 0.70 | MC |
| SRR8582893 | panicle | PM | 0.45 | MC |
| SRR5110429 | panicle | Dawn | 1.44 | MC |
| SRR5110430 | panicle | Dawn | 1.50 | MC |
| SRR5110431 | panicle | Dawn | 1.05 | MC |
| SRR4947496 | root | control | 0.70 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.93 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.45 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.47 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.40 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.65 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.65 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.82 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.82 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.93 | MC |
| SRR5110445 | panicle | Dusk | 1.82 | MC |
| SRR5110446 | panicle | Dusk | 1.08 | MC |
| SRR5110448 | panicle | Dusk | 1.14 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.50 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.64 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.52 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.85 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.95 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.71 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.27 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.34 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.48 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.43 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.51 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.67 | MC |
| SRR5126147 | root | "mock,1_day" | 1.10 | MC |
| SRR5126148 | root | "mock,1_day" | 1.59 | MC |
| SRR5126149 | root | "mock,1_day" | 0.88 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.88 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.69 | MC |
| SRR5126153 | root | "mock,7_days" | 0.41 | MC |
| SRR5126155 | root | "mock,7_days" | 0.57 | MC |
| SRR5126157 | root | "mock,7_days" | 0.73 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.05 | MC |
| SRR5126167 | root | "mock,14_days" | 0.58 | MC |
| SRR5126169 | root | "mock,14_days" | 0.48 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.83 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.94 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.79 | MC |
| SRR4947479 | root | control | 0.68 | MC |
| SRR4947481 | root | control | 0.56 | MC |
| SRR4947485 | root | Al | 0.63 | MC |
| SRR4947488 | root | control | 1.00 | MC |
| SRR4947499 | root | Al | 1.28 | MC |
| SRR4947501 | root | Al | 1.33 | MC |
| SRR4947502 | root | control | 0.68 | MC |
| SRR4947504 | root | control | 1.17 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.78 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502094 | root | control | 0.72 | MC |
| SRR6502095 | root | control | 0.80 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.12 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.37 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.40 | MC |
| SRR6502106 | root | control | 0.35 | MC |
| SRR6502107 | root | control | 0.46 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.76 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.94 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.43 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.29 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.42 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.71 | MC |
| SRR2154082 | seedling | wt | 0.84 | MC |
| SRR2154084 | seedling | wt | 0.33 | MC |
| SRR3098741 | seedling | wt | 0.80 | MC |
| SRR3098742 | seedling | wt | 0.59 | MC |
| SRR3098743 | seedling | wt | 0.92 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.90 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.22 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.47 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.88 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.59 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.48 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.70 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.05 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.56 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.71 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.80 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.37 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.84 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.43 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.66 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.94 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.53 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.66 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.84 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.13 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.01 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.29 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.40 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.06 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.83 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.71 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.70 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.23 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.33 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.22 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.57 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.99 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.00 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.76 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.48 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.82 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.78 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.05 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.25 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.24 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.33 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.73 | MC |