| SRR4457251 | 2nd_leaf | DAH4 | 0.48 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.91 | MC |
| SRR358796 | callus | wt | 7.27 | MC |
| SRR6320498 | carpel | wt | 1.15 | MC |
| SRR5560727 | caryopsis | wild_type | 3.01 | MC |
| SRR5560728 | caryopsis | wild_type | 3.16 | MC |
| SRR5560729 | caryopsis | wild_type | 2.93 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.96 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.66 | MC |
| SRR4947495 | root | control | 3.36 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR7265400 | coleoptile | 2dA | 1.45 | MC |
| SRR7265401 | coleoptile | 2dA | 1.64 | MC |
| SRR7265415 | coleoptile | 4dN | 1.95 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.55 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.10 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.19 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.24 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.27 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.21 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.31 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.54 | MC |
| SRR7265381 | embryo | 1hN | 0.28 | MC |
| SRR7265399 | embryo | 24hN | 0.96 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.52 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.64 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.37 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.30 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.29 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.32 | MC |
| SRR1213691 | flower | wt | 0.67 | MC |
| SRR8060835 | leaf | wild_type | 1.43 | MC |
| SRR8060836 | leaf | wild_type | 0.68 | MC |
| SRR8060837 | leaf | wild_type | 1.06 | MC |
| SRR8240819 | leaf | wild_type | 0.37 | MC |
| SRR8240820 | leaf | wild_type | 0.34 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.78 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.76 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.44 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.49 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.59 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.09 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.10 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.90 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.27 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.42 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.76 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.33 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.10 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.83 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.42 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.74 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.73 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.66 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.73 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.66 | MC |
| SRR1761528 | leaf | drought | 2.73 | MC |
| SRR1761529 | leaf | drought | 2.66 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.32 | MC |
| SRR6417967 | leaf | H2O_control | 1.39 | MC |
| SRR6417968 | leaf | H2O_control | 0.54 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.69 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.54 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.73 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.67 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.07 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.84 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.83 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.48 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.39 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.63 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.71 | MC |
| SRR1213692 | leaf | wt | 0.51 | MC |
| SRR1213693 | leaf | wt | 1.24 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.47 | MC |
| SRR6502088 | leaf | control | 1.34 | MC |
| SRR6502089 | leaf | control | 3.41 | MC |
| SRR6502090 | leaf | control | 2.61 | MC |
| SRR5856927 | leaf | control | 0.65 | MC |
| SRR5856928 | leaf | control | 0.50 | MC |
| SRR5856929 | leaf | control | 0.43 | MC |
| SRR5856930 | leaf | salt | 0.48 | MC |
| SRR5856931 | leaf | salt | 0.50 | MC |
| SRR5856932 | leaf | salt | 0.30 | MC |
| SRR5856933 | leaf | control | 0.81 | MC |
| SRR5856934 | leaf | control | 0.82 | MC |
| SRR5856935 | leaf | control | 0.84 | MC |
| SRR5856936 | leaf | salt | 0.49 | MC |
| SRR5856937 | leaf | salt | 0.47 | MC |
| SRR5856938 | leaf | salt | 0.33 | MC |
| SRR6168974 | leaf | none (control) | 0.86 | MC |
| SRR6168975 | leaf | none (control) | 0.38 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.39 | MC |
| SRR8582893 | panicle | PM | 1.74 | MC |
| SRR5110429 | panicle | Dawn | 1.04 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.86 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.27 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.56 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.32 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.38 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.67 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.22 | MC |
| SRR5110445 | panicle | Dusk | 1.54 | MC |
| SRR5110447 | panicle | Dusk | 2.96 | MC |
| SRR5110448 | panicle | Dusk | 2.81 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.64 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.73 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.38 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.27 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.80 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.73 | MC |
| SRR1633185 | panicle | WT | 1.95 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.43 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.42 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.49 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.47 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.69 | MC |
| SRR5126147 | root | "mock,1_day" | 1.99 | MC |
| SRR5126148 | root | "mock,1_day" | 1.01 | MC |
| SRR5126149 | root | "mock,1_day" | 1.53 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.76 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.26 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.51 | MC |
| SRR5126153 | root | "mock,7_days" | 1.48 | MC |
| SRR5126155 | root | "mock,7_days" | 1.63 | MC |
| SRR5126157 | root | "mock,7_days" | 2.93 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.21 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.83 | MC |
| SRR5126165 | root | "mock,14_days" | 1.93 | MC |
| SRR5126167 | root | "mock,14_days" | 1.40 | MC |
| SRR5126169 | root | "mock,14_days" | 1.88 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.37 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.68 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.06 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.28 | MC |
| SRR4947478 | root | control | 2.23 | MC |
| SRR4947483 | root | Al | 2.27 | MC |
| SRR4947487 | root | control | 3.23 | MC |
| SRR4947489 | root | control | 0.89 | MC |
| SRR4947490 | root | Al | 1.39 | MC |
| SRR4947491 | root | Al | 1.79 | MC |
| SRR4947493 | root | Al | 1.90 | MC |
| SRR4947494 | root | control | 2.02 | MC |
| SRR4947497 | root | control | 0.57 | MC |
| SRR4947498 | root | Al | 3.20 | MC |
| SRR4947499 | root | Al | 2.21 | MC |
| SRR4947501 | root | Al | 4.57 | MC |
| SRR4947502 | root | control | 2.52 | MC |
| SRR4947503 | root | control | 1.55 | MC |
| SRR4947505 | root | control | 0.95 | MC |
| SRR4947506 | root | Al | 0.99 | MC |
| SRR4947508 | root | Al | 3.09 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.13 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.11 | MC |
| SRR6502095 | root | control | 0.45 | MC |
| SRR6502096 | root | control | 1.58 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.46 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.78 | MC |
| SRR6502106 | root | control | 0.63 | MC |
| SRR6502108 | root | control | 1.86 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.23 | MC |
| SRR6441554 | seedling | wild_type | 0.82 | MC |
| SRR6441555 | seedling | wild_type | 0.45 | MC |
| SRR2154086 | seedling | wt | 0.39 | MC |
| SRR2154082 | seedling | wt | 0.34 | MC |
| SRR2154083 | seedling | wt | 0.82 | MC |
| SRR2154084 | seedling | wt | 0.71 | MC |
| SRR2154087 | seedling | wt | 4.05 | MC |
| SRR3098741 | seedling | wt | 1.30 | MC |
| SRR3098742 | seedling | wt | 1.11 | MC |
| SRR3098743 | seedling | wt | 1.04 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.44 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.28 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.74 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.12 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.31 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.77 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.76 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.69 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.95 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.01 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.12 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.36 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.63 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.07 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.60 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.52 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.21 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.50 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.63 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.32 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.07 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.68 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.47 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.91 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.32 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.89 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.99 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.87 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.50 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.80 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.34 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.86 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.14 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.24 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.95 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.67 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.26 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.95 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.86 | MC |