| SRR5560729 | caryopsis | wild_type | 0.28 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.69 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.33 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.65 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.23 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR1213691 | flower | wt | 0.39 | MC |
| SRR8060835 | leaf | wild_type | 0.92 | MC |
| SRR8060837 | leaf | wild_type | 1.07 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.36 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.23 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.59 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.00 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.20 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.58 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR5856929 | leaf | control | 0.22 | MC |
| SRR5856931 | leaf | salt | 0.15 | MC |
| SRR5856934 | leaf | control | 0.24 | MC |
| SRR5856935 | leaf | control | 0.32 | MC |
| SRR5856936 | leaf | salt | 0.15 | MC |
| SRR5856937 | leaf | salt | 0.29 | MC |
| SRR6168973 | leaf | none (control) | 1.40 | MC |
| SRR6168974 | leaf | none (control) | 0.66 | MC |
| SRR6168975 | leaf | none (control) | 0.88 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR4947496 | root | control | 1.30 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.60 | MC |
| SRR1633182 | panicle | WT | 1.26 | MC |
| SRR1633185 | panicle | WT | 1.42 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.64 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.59 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.13 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.80 | MC |
| SRR4947480 | root | control | 0.57 | MC |
| SRR4947481 | root | control | 0.80 | MC |
| SRR4947485 | root | Al | 0.74 | MC |
| SRR4947488 | root | control | 0.61 | MC |
| SRR4947489 | root | control | 0.92 | MC |
| SRR4947491 | root | Al | 0.49 | MC |
| SRR4947492 | root | Al | 0.59 | MC |
| SRR4947493 | root | Al | 0.56 | MC |
| SRR4947497 | root | control | 0.72 | MC |
| SRR4947500 | root | Al | 0.91 | MC |
| SRR4947501 | root | Al | 0.94 | MC |
| SRR4947504 | root | control | 0.88 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.52 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.47 | MC |
| SRR6441554 | seedling | wild_type | 1.05 | MC |
| SRR6441555 | seedling | wild_type | 1.76 | MC |
| SRR2154082 | seedling | wt | 0.31 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.74 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.47 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.21 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.09 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.35 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.09 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.52 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.87 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.23 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.03 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.47 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.27 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.94 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.08 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.82 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.48 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.75 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.50 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.72 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.65 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.78 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |