| SRR4457249 | 2nd_leaf | DAH4 | 1.01 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.06 | MC |
| SRR5560727 | caryopsis | wild_type | 0.87 | MC |
| SRR5560729 | caryopsis | wild_type | 0.69 | MC |
| SRR7265400 | coleoptile | 2dA | 2.28 | MC |
| SRR7265401 | coleoptile | 2dA | 1.93 | MC |
| SRR7265402 | coleoptile | 2dA | 2.84 | MC |
| SRR7265406 | coleoptile | 3dA | 0.66 | MC |
| SRR7265407 | coleoptile | 3dA | 0.35 | MC |
| SRR7265412 | coleoptile | 4dA | 1.11 | MC |
| SRR7265413 | coleoptile | 4dA | 2.96 | MC |
| SRR7265414 | coleoptile | 4dA | 1.60 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.55 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.92 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.68 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.99 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.31 | MC |
| SRR7265376 | embryo | 1hA | 1.06 | MC |
| SRR7265377 | embryo | 1hA | 0.62 | MC |
| SRR7265378 | embryo | 1hA | 1.11 | MC |
| SRR7265379 | embryo | 1hN | 0.84 | MC |
| SRR7265380 | embryo | 1hN | 0.64 | MC |
| SRR7265381 | embryo | 1hN | 0.66 | MC |
| SRR7265382 | embryo | 3hA | 4.53 | MC |
| SRR7265383 | embryo | 3hA | 3.12 | MC |
| SRR7265384 | embryo | 3hA | 3.02 | MC |
| SRR7265385 | embryo | 3hN | 1.46 | MC |
| SRR7265386 | embryo | 3hN | 1.22 | MC |
| SRR7265387 | embryo | 3hN | 1.33 | MC |
| SRR7265394 | embryo | 24hA | 3.33 | MC |
| SRR7265395 | embryo | 24hA | 4.77 | MC |
| SRR7265396 | embryo | 24hA | 3.83 | MC |
| SRR2338868 | endosprem | high_temperature | 0.57 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.56 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.92 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.89 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.45 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.38 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.70 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.16 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.39 | MC |
| SRR1213691 | flower | wt | 0.39 | MC |
| SRR8060837 | leaf | wild_type | 0.40 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.81 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.05 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.77 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.86 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.78 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.95 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.79 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.55 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.30 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.71 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.18 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.41 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.60 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.47 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.48 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.96 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.66 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.08 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.28 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.03 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.04 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.92 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.43 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.85 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.67 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.57 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.51 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.30 | MC |
| SRR6417969 | leaf | H2O_control | 0.80 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.56 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.29 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.15 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.28 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.54 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.44 | MC |
| SRR1213692 | leaf | wt | 1.42 | MC |
| SRR1213693 | leaf | wt | 0.94 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.79 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.68 | MC |
| SRR6502088 | leaf | control | 3.00 | MC |
| SRR6502089 | leaf | control | 2.09 | MC |
| SRR6502090 | leaf | control | 2.24 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR6502100 | leaf | control | 0.59 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.15 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.26 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.75 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.61 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR8582891 | panicle | PM | 3.42 | MC |
| SRR8582893 | panicle | PM | 2.82 | MC |
| SRR5110430 | panicle | Dawn | 0.76 | MC |
| SRR5110431 | panicle | Dawn | 0.68 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.62 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.73 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.60 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.14 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.84 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.73 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.02 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.02 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.48 | MC |
| SRR5110447 | panicle | Dusk | 0.83 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.52 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.77 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.36 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.58 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.59 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.20 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.37 | MC |
| SRR1633182 | panicle | WT | 1.97 | MC |
| SRR1633185 | panicle | WT | 2.66 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.94 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.51 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.63 | MC |
| SRR5126147 | root | "mock,1_day" | 0.59 | MC |
| SRR5126148 | root | "mock,1_day" | 2.64 | MC |
| SRR5126149 | root | "mock,1_day" | 1.92 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.76 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.13 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.95 | MC |
| SRR5126153 | root | "mock,7_days" | 0.62 | MC |
| SRR5126155 | root | "mock,7_days" | 0.70 | MC |
| SRR5126157 | root | "mock,7_days" | 0.75 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.99 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.08 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.76 | MC |
| SRR5126167 | root | "mock,14_days" | 0.93 | MC |
| SRR5126169 | root | "mock,14_days" | 0.40 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.91 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.86 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.27 | MC |
| SRR1213694 | root | wt | 0.28 | MC |
| SRR1213695 | root | wt | 1.74 | MC |
| SRR4947509 | root | Al | 0.74 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.06 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.90 | MC |
| SRR6502094 | root | control | 1.26 | MC |
| SRR6502095 | root | control | 1.86 | MC |
| SRR6502096 | root | control | 0.95 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.05 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.31 | MC |
| SRR6502108 | root | control | 0.61 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.67 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.96 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.31 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.89 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.60 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.76 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.97 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.01 | MC |
| SRR2154086 | seedling | wt | 0.52 | MC |
| SRR3098741 | seedling | wt | 1.97 | MC |
| SRR3098742 | seedling | wt | 0.17 | MC |
| SRR3098743 | seedling | wt | 1.40 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.96 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.15 | MC |
| SRR1944583 | seedling | no_treatment | 0.93 | MC |
| SRR358791 | seedling | wt | 3.43 | MC |
| SRR358792 | seedling | wt | 3.61 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.86 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.91 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.67 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.50 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.34 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.54 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.70 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.10 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.92 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.98 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.23 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.92 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.16 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.39 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.22 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.68 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.84 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.75 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.33 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.80 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.09 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.15 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.88 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.59 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.12 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.11 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.16 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.43 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.16 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.92 | MC |