| SRR4457249 | 2nd_leaf | DAH4 | 0.83 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.54 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.42 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.25 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.47 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.75 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.84 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.66 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.65 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.34 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.68 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.95 | MC |
| SRR5560727 | caryopsis | wild_type | 0.92 | MC |
| SRR5560728 | caryopsis | wild_type | 0.82 | MC |
| SRR5560729 | caryopsis | wild_type | 0.59 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.85 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.26 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.45 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.35 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.44 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.57 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.46 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.35 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.41 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.62 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.32 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.59 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.05 | MC |
| SRR8060835 | leaf | wild_type | 1.31 | MC |
| SRR8060836 | leaf | wild_type | 1.56 | MC |
| SRR8060837 | leaf | wild_type | 1.18 | MC |
| SRR8240824 | leaf | wild_type | 0.86 | MC |
| SRR8240825 | leaf | wild_type | 0.66 | MC |
| SRR8240826 | leaf | wild_type | 0.24 | MC |
| SRR8240818 | leaf | wild_type | 0.76 | MC |
| SRR8240819 | leaf | wild_type | 0.87 | MC |
| SRR8240820 | leaf | wild_type | 1.26 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.44 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.70 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.26 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.18 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR504365 | leaf | wt | 1.26 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.29 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.39 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.26 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.94 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.26 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.81 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.50 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.75 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.58 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.70 | MC |
| SRR1213692 | leaf | wt | 2.08 | MC |
| SRR1213693 | leaf | wt | 3.39 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.97 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR6502088 | leaf | control | 0.60 | MC |
| SRR6502089 | leaf | control | 0.42 | MC |
| SRR6502090 | leaf | control | 0.35 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.88 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.66 | MC |
| SRR6502100 | leaf | control | 0.72 | MC |
| SRR6502101 | leaf | control | 0.84 | MC |
| SRR6502102 | leaf | control | 0.65 | MC |
| SRR5856934 | leaf | control | 0.19 | MC |
| SRR5856935 | leaf | control | 0.20 | MC |
| SRR6168973 | leaf | none (control) | 1.00 | MC |
| SRR6168974 | leaf | none (control) | 1.53 | MC |
| SRR6168975 | leaf | none (control) | 1.80 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.16 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.21 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.30 | MC |
| SRR8582891 | panicle | PM | 0.62 | MC |
| SRR8582892 | panicle | PM | 0.79 | MC |
| SRR8582893 | panicle | PM | 0.65 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.68 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.31 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.29 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.34 | MC |
| SRR1633182 | panicle | WT | 0.34 | MC |
| SRR1633185 | panicle | WT | 0.45 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.50 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.39 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.51 | MC |
| SRR5126147 | root | "mock,1_day" | 0.32 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.31 | MC |
| SRR5126169 | root | "mock,14_days" | 0.35 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.47 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.34 | MC |
| SRR1213695 | root | wt | 2.48 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.61 | MC |
| SRR6441554 | seedling | wild_type | 0.47 | MC |
| SRR6441555 | seedling | wild_type | 0.63 | MC |
| SRR2154085 | seedling | wt | 0.52 | MC |
| SRR2154087 | seedling | wt | 0.39 | MC |
| SRR3098741 | seedling | wt | 0.58 | MC |
| SRR3098742 | seedling | wt | 0.35 | MC |
| SRR3098743 | seedling | wt | 0.65 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.32 | MC |
| SRR1944583 | seedling | no_treatment | 0.58 | MC |
| SRR358792 | seedling | wt | 0.69 | MC |
| SRR358794 | seedling | wt | 0.72 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.31 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.94 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.70 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.32 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.68 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.74 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.38 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.52 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.50 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.01 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.38 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.85 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.47 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.88 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.70 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.87 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.27 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.68 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.60 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.66 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.63 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |