| SRR4457249 | 2nd_leaf | DAH4 | 1.37 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.34 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.81 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.19 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.59 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.12 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.91 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.22 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.56 | MC |
| SRR358795 | callus | wt | 2.86 | MC |
| SRR358796 | callus | wt | 3.50 | MC |
| SRR358797 | callus | wt | 3.14 | MC |
| SRR358798 | callus | wt | 3.70 | MC |
| SRR5560727 | caryopsis | wild_type | 3.74 | MC |
| SRR5560728 | caryopsis | wild_type | 2.44 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.56 | MC |
| SRR7265400 | coleoptile | 2dA | 1.24 | MC |
| SRR7265401 | coleoptile | 2dA | 1.36 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.40 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR7265377 | embryo | 1hA | 2.54 | MC |
| SRR7265379 | embryo | 1hN | 3.28 | MC |
| SRR7265380 | embryo | 1hN | 2.22 | MC |
| SRR7265384 | embryo | 3hA | 1.35 | MC |
| SRR7265386 | embryo | 3hN | 1.40 | MC |
| SRR7265390 | embryo | 12hA | 1.34 | MC |
| SRR7265392 | embryo | 12hN | 0.51 | MC |
| SRR7265393 | embryo | 12hN | 0.75 | MC |
| SRR7265399 | embryo | 24hN | 0.41 | MC |
| SRR2338866 | endosprem | control | 2.19 | MC |
| SRR2338867 | endosprem | control | 0.81 | MC |
| SRR2338868 | endosprem | high_temperature | 1.16 | MC |
| SRR2338869 | endosprem | high_temperature | 1.08 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.28 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.10 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.89 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.45 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.69 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.17 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.36 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.94 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.51 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.72 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.15 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.62 | MC |
| SRR1213691 | flower | wt | 3.02 | MC |
| SRR8060837 | leaf | wild_type | 0.33 | MC |
| SRR8240826 | leaf | wild_type | 0.59 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.19 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.38 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.24 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.32 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.23 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.66 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.38 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.63 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.81 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.41 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.54 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.16 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.53 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.87 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.07 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.93 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.29 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.54 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.87 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.57 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.60 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.26 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.30 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.30 | MC |
| SRR1761529 | leaf | drought | 5.30 | MC |
| SRR504365 | leaf | wt | 3.09 | MC |
| SRR6417967 | leaf | H2O_control | 0.62 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.61 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.83 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.23 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.24 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.14 | MC |
| SRR5856928 | leaf | control | 0.67 | MC |
| SRR5856929 | leaf | control | 0.17 | MC |
| SRR5856931 | leaf | salt | 0.25 | MC |
| SRR5856932 | leaf | salt | 0.53 | MC |
| SRR5856933 | leaf | control | 0.59 | MC |
| SRR5856938 | leaf | salt | 0.28 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.99 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.17 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.01 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.28 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.66 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.05 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.36 | MC |
| SRR6168975 | leaf | none (control) | 2.87 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.95 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.29 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.05 | MC |
| SRR8582888 | panicle | AM | 2.82 | MC |
| SRR8582893 | panicle | PM | 4.31 | MC |
| SRR5110432 | panicle | Dawn | 3.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.45 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.57 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.83 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.71 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.12 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.48 | MC |
| SRR1633182 | panicle | WT | 0.75 | MC |
| SRR1633185 | panicle | WT | 1.60 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.74 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.21 | MC |
| SRR5126147 | root | "mock,1_day" | 0.52 | MC |
| SRR5126148 | root | "mock,1_day" | 0.63 | MC |
| SRR5126149 | root | "mock,1_day" | 1.23 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.63 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.46 | MC |
| SRR5126153 | root | "mock,7_days" | 0.79 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.37 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.73 | MC |
| SRR5126165 | root | "mock,14_days" | 2.54 | MC |
| SRR5126167 | root | "mock,14_days" | 0.47 | MC |
| SRR5126169 | root | "mock,14_days" | 0.52 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.07 | MC |
| SRR4947488 | root | control | 0.47 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.31 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.62 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.27 | MC |
| SRR6502096 | root | control | 0.65 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.57 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.06 | MC |
| SRR6502106 | root | control | 0.58 | MC |
| SRR6502108 | root | control | 0.74 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.60 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.25 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.23 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.05 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.36 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.70 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.65 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.70 | MC |
| SRR6441555 | seedling | wild_type | 1.78 | MC |
| SRR2154082 | seedling | wt | 1.93 | MC |
| SRR2154083 | seedling | wt | 3.01 | MC |
| SRR2154084 | seedling | wt | 0.79 | MC |
| SRR2154087 | seedling | wt | 2.24 | MC |
| SRR3098742 | seedling | wt | 1.00 | MC |
| SRR3098743 | seedling | wt | 2.48 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.14 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.23 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.03 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.73 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.68 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.80 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.73 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.24 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.59 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.09 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.72 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.48 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.65 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.52 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.96 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.60 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.79 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.40 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.52 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.41 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.83 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.55 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.12 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.65 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.82 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.42 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.32 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.67 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.96 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.85 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.79 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.21 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.97 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.29 | MC |