| SRR4457250 | 2nd_leaf | DAH4 | 2.07 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.21 | MC |
| SRR6320498 | carpel | wt | 5.17 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.93 | MC |
| SRR4947495 | root | control | 3.94 | MC |
| SRR7265400 | coleoptile | 2dA | 0.77 | MC |
| SRR7265401 | coleoptile | 2dA | 1.81 | MC |
| SRR7265402 | coleoptile | 2dA | 0.83 | MC |
| SRR7265403 | coleoptile | 2dN | 0.84 | MC |
| SRR7265404 | coleoptile | 2dN | 0.47 | MC |
| SRR7265405 | coleoptile | 2dN | 0.71 | MC |
| SRR7265406 | coleoptile | 3dA | 0.78 | MC |
| SRR7265407 | coleoptile | 3dA | 1.97 | MC |
| SRR7265409 | coleoptile | 3dN | 1.12 | MC |
| SRR7265410 | coleoptile | 3dN | 0.50 | MC |
| SRR7265415 | coleoptile | 4dN | 1.51 | MC |
| SRR7265417 | coleoptile | 4dN | 1.22 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.42 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.12 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.52 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.62 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.16 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.77 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265376 | embryo | 1hA | 0.44 | MC |
| SRR7265377 | embryo | 1hA | 3.08 | MC |
| SRR7265379 | embryo | 1hN | 0.90 | MC |
| SRR7265381 | embryo | 1hN | 0.55 | MC |
| SRR7265383 | embryo | 3hA | 2.64 | MC |
| SRR7265384 | embryo | 3hA | 1.22 | MC |
| SRR7265385 | embryo | 3hN | 0.87 | MC |
| SRR7265388 | embryo | 12hA | 1.26 | MC |
| SRR7265390 | embryo | 12hA | 1.10 | MC |
| SRR7265392 | embryo | 12hN | 3.07 | MC |
| SRR7265393 | embryo | 12hN | 1.13 | MC |
| SRR7265394 | embryo | 24hA | 2.35 | MC |
| SRR7265395 | embryo | 24hA | 1.23 | MC |
| SRR7265396 | embryo | 24hA | 1.78 | MC |
| SRR7265397 | embryo | 24hN | 0.98 | MC |
| SRR7265398 | embryo | 24hN | 3.51 | MC |
| SRR7265399 | embryo | 24hN | 1.00 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.82 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.73 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.93 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.96 | MC |
| SRR1213691 | flower | wt | 0.73 | MC |
| SRR8060836 | leaf | wild_type | 3.20 | MC |
| SRR8240824 | leaf | wild_type | 1.71 | MC |
| SRR8240826 | leaf | wild_type | 0.47 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.84 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.49 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.98 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.48 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.71 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.25 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.67 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.33 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.79 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.33 | MC |
| SRR6417967 | leaf | H2O_control | 3.46 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.27 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.30 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.50 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.66 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.02 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.95 | MC |
| SRR1213692 | leaf | wt | 2.55 | MC |
| SRR5856936 | leaf | salt | 1.52 | MC |
| SRR5856938 | leaf | salt | 0.33 | MC |
| SRR6168975 | leaf | none (control) | 3.12 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.22 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.47 | MC |
| SRR6168979 | leaf | none (control) | 0.89 | MC |
| SRR6168980 | leaf | none (control) | 1.13 | MC |
| SRR8582889 | panicle | AM | 0.21 | MC |
| SRR8582893 | panicle | PM | 2.84 | MC |
| SRR5110432 | panicle | Dawn | 0.43 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.30 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.31 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.60 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.59 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.91 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.04 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.05 | MC |
| SRR5126157 | root | "mock,7_days" | 1.45 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.41 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.11 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.69 | MC |
| SRR5126167 | root | "mock,14_days" | 2.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.62 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.55 | MC |
| SRR4947479 | root | control | 2.92 | MC |
| SRR4947481 | root | control | 0.63 | MC |
| SRR4947482 | root | Al | 1.93 | MC |
| SRR4947484 | root | Al | 3.82 | MC |
| SRR4947485 | root | Al | 3.84 | MC |
| SRR4947487 | root | control | 1.32 | MC |
| SRR4947488 | root | control | 1.17 | MC |
| SRR4947489 | root | control | 3.61 | MC |
| SRR4947490 | root | Al | 0.66 | MC |
| SRR4947492 | root | Al | 0.84 | MC |
| SRR4947497 | root | control | 3.39 | MC |
| SRR4947498 | root | Al | 2.76 | MC |
| SRR4947499 | root | Al | 4.13 | MC |
| SRR4947508 | root | Al | 5.00 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.46 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.57 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.61 | MC |
| SRR2154086 | seedling | wt | 2.14 | MC |
| SRR2154082 | seedling | wt | 1.86 | MC |
| SRR2154084 | seedling | wt | 2.75 | MC |
| SRR2154085 | seedling | wt | 3.69 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.18 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.72 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.34 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.64 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.78 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.43 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.80 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.58 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.15 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.40 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.86 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.49 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.14 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 13.43 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.12 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.10 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.02 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.34 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.05 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.49 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.52 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.81 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.08 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.47 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.41 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.48 | MC |