| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.58 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.56 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.73 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.24 | MC |
| SRR5560727 | caryopsis | wild_type | 3.43 | MC |
| SRR5560728 | caryopsis | wild_type | 4.16 | MC |
| SRR5560729 | caryopsis | wild_type | 3.63 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.22 | MC |
| SRR7265410 | coleoptile | 3dN | 0.44 | MC |
| SRR7265411 | coleoptile | 3dN | 0.51 | MC |
| SRR7265414 | coleoptile | 4dA | 0.67 | MC |
| SRR7265416 | coleoptile | 4dN | 0.51 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.20 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.47 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.27 | MC |
| SRR1213691 | flower | wt | 1.19 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.86 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.34 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.54 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.56 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.45 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.03 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.56 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.63 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.69 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.56 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.93 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.64 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.93 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.64 | MC |
| SRR1761528 | leaf | drought | 0.93 | MC |
| SRR1761529 | leaf | drought | 0.64 | MC |
| SRR504365 | leaf | wt | 1.05 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.34 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.29 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.27 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.85 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.62 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.35 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.42 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.69 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.88 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.74 | MC |
| SRR1213692 | leaf | wt | 0.54 | MC |
| SRR1213693 | leaf | wt | 0.34 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502100 | leaf | control | 0.88 | MC |
| SRR6502102 | leaf | control | 0.37 | MC |
| SRR6168973 | leaf | none (control) | 1.14 | MC |
| SRR6168974 | leaf | none (control) | 1.43 | MC |
| SRR6168975 | leaf | none (control) | 2.23 | MC |
| SRR6168980 | leaf | none (control) | 0.46 | MC |
| SRR6168981 | leaf | none (control) | 2.45 | MC |
| SRR8582891 | panicle | PM | 0.69 | MC |
| SRR8582893 | panicle | PM | 1.14 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.44 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.33 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.58 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.32 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.02 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.36 | MC |
| SRR5126147 | root | "mock,1_day" | 0.65 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.43 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.48 | MC |
| SRR5126153 | root | "mock,7_days" | 0.70 | MC |
| SRR5126157 | root | "mock,7_days" | 1.22 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.01 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.55 | MC |
| SRR5126165 | root | "mock,14_days" | 0.39 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126169 | root | "mock,14_days" | 1.01 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.47 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.11 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.85 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.77 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.37 | MC |
| SRR1213695 | root | wt | 0.26 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.52 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.13 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.72 | MC |
| SRR6502106 | root | control | 1.29 | MC |
| SRR6502107 | root | control | 1.42 | MC |
| SRR6502108 | root | control | 0.56 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.92 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.11 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.50 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.32 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.26 | MC |
| SRR6441554 | seedling | wild_type | 1.03 | MC |
| SRR6441555 | seedling | wild_type | 1.00 | MC |
| SRR2154086 | seedling | wt | 0.43 | MC |
| SRR2154085 | seedling | wt | 1.22 | MC |
| SRR2154087 | seedling | wt | 1.08 | MC |
| SRR3098741 | seedling | wt | 0.55 | MC |
| SRR3098742 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.49 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.48 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.46 | MC |
| SRR358791 | seedling | wt | 1.80 | MC |
| SRR358792 | seedling | wt | 0.89 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.17 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.92 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.23 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.49 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.92 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.93 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.49 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.57 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.41 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.27 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.50 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.92 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.52 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.39 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.75 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.71 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.20 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.72 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.67 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.82 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.50 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.42 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.94 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.27 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.17 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.91 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.90 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.47 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.32 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.60 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.14 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.63 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.66 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.75 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.20 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.22 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.60 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.28 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.87 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.21 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.12 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.63 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.39 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.89 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.67 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.81 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.91 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.66 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.16 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.56 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.12 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.02 | MC |