| SRR4457250 | 2nd_leaf | DAH4 | 3.88 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.69 | MC |
| SRR3745126 | anther | wt | 3.21 | MC |
| SRR3745127 | anther | wt | 3.26 | MC |
| SRR6320498 | carpel | wt | 5.09 | MC |
| SRR5560727 | caryopsis | wild_type | 5.12 | MC |
| SRR5560728 | caryopsis | wild_type | 4.87 | MC |
| SRR5560729 | caryopsis | wild_type | 4.29 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.04 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.79 | MC |
| SRR4947495 | root | control | 1.92 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.37 | MC |
| SRR7265400 | coleoptile | 2dA | 1.38 | MC |
| SRR7265401 | coleoptile | 2dA | 0.84 | MC |
| SRR7265402 | coleoptile | 2dA | 0.95 | MC |
| SRR7265404 | coleoptile | 2dN | 0.99 | MC |
| SRR7265405 | coleoptile | 2dN | 0.62 | MC |
| SRR7265407 | coleoptile | 3dA | 1.22 | MC |
| SRR7265408 | coleoptile | 3dA | 0.72 | MC |
| SRR7265410 | coleoptile | 3dN | 2.84 | MC |
| SRR7265411 | coleoptile | 3dN | 3.06 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.40 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.06 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.62 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.94 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.69 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.78 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.89 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.42 | MC |
| SRR7265376 | embryo | 1hA | 3.14 | MC |
| SRR7265377 | embryo | 1hA | 2.52 | MC |
| SRR7265378 | embryo | 1hA | 1.51 | MC |
| SRR7265379 | embryo | 1hN | 1.05 | MC |
| SRR7265380 | embryo | 1hN | 2.48 | MC |
| SRR7265381 | embryo | 1hN | 2.39 | MC |
| SRR7265382 | embryo | 3hA | 1.95 | MC |
| SRR7265383 | embryo | 3hA | 1.23 | MC |
| SRR7265386 | embryo | 3hN | 2.42 | MC |
| SRR7265387 | embryo | 3hN | 2.63 | MC |
| SRR7265388 | embryo | 12hA | 2.02 | MC |
| SRR7265389 | embryo | 12hA | 0.51 | MC |
| SRR7265390 | embryo | 12hA | 1.08 | MC |
| SRR7265391 | embryo | 12hN | 1.47 | MC |
| SRR7265392 | embryo | 12hN | 1.84 | MC |
| SRR7265393 | embryo | 12hN | 0.85 | MC |
| SRR7265395 | embryo | 24hA | 1.16 | MC |
| SRR7265396 | embryo | 24hA | 1.37 | MC |
| SRR2338866 | endosprem | control | 3.15 | MC |
| SRR976168 | flag_leaf | wild_type | 2.53 | MC |
| SRR8060835 | leaf | wild_type | 1.40 | MC |
| SRR8060836 | leaf | wild_type | 2.53 | MC |
| SRR8060837 | leaf | wild_type | 1.79 | MC |
| SRR8240824 | leaf | wild_type | 2.49 | MC |
| SRR8240825 | leaf | wild_type | 0.65 | MC |
| SRR8240826 | leaf | wild_type | 1.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.32 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.16 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.41 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.13 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.23 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.87 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.22 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.08 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.96 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.77 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.98 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.86 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.48 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.34 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.28 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.06 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.03 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.71 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.87 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.46 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.13 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.60 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.72 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.02 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.40 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.67 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.03 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.98 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.29 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.73 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.55 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.29 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.73 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.55 | MC |
| SRR1761528 | leaf | drought | 4.29 | MC |
| SRR1761529 | leaf | drought | 1.73 | MC |
| SRR1761531 | leaf | control | 2.55 | MC |
| SRR6417967 | leaf | H2O_control | 2.61 | MC |
| SRR6417968 | leaf | H2O_control | 1.65 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.94 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.54 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.11 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.40 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.37 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.79 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.57 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.00 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.34 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.09 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.49 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.81 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.20 | MC |
| SRR6502101 | leaf | control | 3.41 | MC |
| SRR5856928 | leaf | control | 2.18 | MC |
| SRR5856930 | leaf | salt | 1.31 | MC |
| SRR5856936 | leaf | salt | 1.76 | MC |
| SRR5856938 | leaf | salt | 1.27 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.37 | MC |
| SRR6168973 | leaf | none (control) | 3.52 | MC |
| SRR6168974 | leaf | none (control) | 3.62 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.02 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.36 | MC |
| SRR6168981 | leaf | none (control) | 2.30 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.13 | MC |
| SRR8582888 | panicle | AM | 1.59 | MC |
| SRR8582889 | panicle | AM | 1.06 | MC |
| SRR8582890 | panicle | AM | 1.99 | MC |
| SRR8582891 | panicle | PM | 4.55 | MC |
| SRR8582892 | panicle | PM | 4.63 | MC |
| SRR8582893 | panicle | PM | 3.96 | MC |
| SRR5110429 | panicle | Dawn | 2.31 | MC |
| SRR5110431 | panicle | Dawn | 2.23 | MC |
| SRR5110432 | panicle | Dawn | 2.30 | MC |
| SRR4947496 | root | control | 2.26 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.04 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.46 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.72 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.20 | MC |
| SRR5110437 | panicle | Dawn + 7h | 4.19 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.49 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.17 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.36 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.71 | MC |
| SRR5110445 | panicle | Dusk | 3.75 | MC |
| SRR5110446 | panicle | Dusk | 4.21 | MC |
| SRR5110447 | panicle | Dusk | 2.59 | MC |
| SRR5110448 | panicle | Dusk | 4.59 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.36 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.29 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.50 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.54 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.80 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.80 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.96 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.59 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.33 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.08 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.27 | MC |
| SRR1633182 | panicle | WT | 3.80 | MC |
| SRR1633185 | panicle | WT | 2.25 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.47 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.47 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.33 | MC |
| SRR5126147 | root | "mock,1_day" | 3.71 | MC |
| SRR5126148 | root | "mock,1_day" | 0.68 | MC |
| SRR5126149 | root | "mock,1_day" | 4.00 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.41 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.63 | MC |
| SRR5126155 | root | "mock,7_days" | 3.60 | MC |
| SRR5126157 | root | "mock,7_days" | 3.25 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.19 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.39 | MC |
| SRR5126169 | root | "mock,14_days" | 3.98 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.99 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.01 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.25 | MC |
| SRR4947478 | root | control | 1.95 | MC |
| SRR4947480 | root | control | 0.72 | MC |
| SRR4947481 | root | control | 1.48 | MC |
| SRR4947482 | root | Al | 2.30 | MC |
| SRR4947483 | root | Al | 1.69 | MC |
| SRR4947484 | root | Al | 3.06 | MC |
| SRR4947485 | root | Al | 3.62 | MC |
| SRR4947487 | root | control | 1.80 | MC |
| SRR4947488 | root | control | 2.39 | MC |
| SRR4947489 | root | control | 2.50 | MC |
| SRR4947490 | root | Al | 2.34 | MC |
| SRR4947492 | root | Al | 0.90 | MC |
| SRR4947493 | root | Al | 3.10 | MC |
| SRR4947494 | root | control | 0.63 | MC |
| SRR4947497 | root | control | 2.96 | MC |
| SRR4947498 | root | Al | 1.76 | MC |
| SRR4947499 | root | Al | 1.43 | MC |
| SRR4947501 | root | Al | 1.02 | MC |
| SRR4947502 | root | control | 1.55 | MC |
| SRR4947503 | root | control | 2.33 | MC |
| SRR4947504 | root | control | 2.34 | MC |
| SRR4947505 | root | control | 2.00 | MC |
| SRR4947506 | root | Al | 3.17 | MC |
| SRR4947507 | root | Al | 2.41 | MC |
| SRR4947508 | root | Al | 2.29 | MC |
| SRR4947509 | root | Al | 2.87 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.37 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.75 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.32 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.04 | MC |
| SRR6502107 | root | control | 0.98 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.41 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.68 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.77 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.99 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.89 | MC |
| SRR6441554 | seedling | wild_type | 3.12 | MC |
| SRR6441555 | seedling | wild_type | 1.96 | MC |
| SRR2154082 | seedling | wt | 3.41 | MC |
| SRR2154083 | seedling | wt | 3.32 | MC |
| SRR2154084 | seedling | wt | 3.46 | MC |
| SRR2154085 | seedling | wt | 4.18 | MC |
| SRR3098742 | seedling | wt | 1.82 | MC |
| SRR3098743 | seedling | wt | 1.96 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.79 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.79 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.88 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.22 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.48 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.36 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.70 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.41 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.80 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.18 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.90 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.36 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 6.63 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.90 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.80 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.96 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.08 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.97 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.47 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.82 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.84 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 4.06 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.92 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.60 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.02 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.80 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.87 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.31 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.63 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.43 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.95 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.50 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.31 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.29 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.43 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.01 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.55 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.23 | MC |