| SRR5560728 | caryopsis | wild_type | 4.78 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.44 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.68 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.34 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.22 | MC |
| SRR7265376 | embryo | 1hA | 0.43 | MC |
| SRR7265378 | embryo | 1hA | 0.28 | MC |
| SRR7265381 | embryo | 1hN | 0.32 | MC |
| SRR7265386 | embryo | 3hN | 0.27 | MC |
| SRR7265387 | embryo | 3hN | 0.24 | MC |
| SRR2338866 | endosprem | control | 1.38 | MC |
| SRR2338867 | endosprem | control | 0.62 | MC |
| SRR2338868 | endosprem | high_temperature | 1.03 | MC |
| SRR2338869 | endosprem | high_temperature | 0.88 | MC |
| SRR8240825 | leaf | wild_type | 0.52 | MC |
| SRR8240826 | leaf | wild_type | 0.30 | MC |
| SRR8240818 | leaf | wild_type | 0.26 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.39 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.47 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.73 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.86 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.71 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.20 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.48 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.78 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.46 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.19 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.61 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.21 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.17 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.03 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.85 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.58 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.29 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.34 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.03 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.48 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.86 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.69 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.37 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.96 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.36 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.63 | MC |
| SRR6417969 | leaf | H2O_control | 0.95 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.49 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.86 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.24 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.83 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.95 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.50 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.10 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.63 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.45 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.79 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.70 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.95 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.29 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.01 | MC |
| SRR5856937 | leaf | salt | 0.19 | MC |
| SRR6168975 | leaf | none (control) | 0.37 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168980 | leaf | none (control) | 0.24 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR5110432 | panicle | Dawn | 0.95 | MC |
| SRR4947496 | root | control | 1.96 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.37 | MC |
| SRR5110447 | panicle | Dusk | 3.70 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.44 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.24 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.81 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.50 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.35 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126153 | root | "mock,7_days" | 4.06 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.50 | MC |
| SRR5126165 | root | "mock,14_days" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 4.12 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.42 | MC |
| SRR1213694 | root | wt | 0.21 | MC |
| SRR4947480 | root | control | 2.63 | MC |
| SRR4947481 | root | control | 2.80 | MC |
| SRR4947484 | root | Al | 4.53 | MC |
| SRR4947485 | root | Al | 0.94 | MC |
| SRR4947492 | root | Al | 3.61 | MC |
| SRR4947497 | root | control | 3.65 | MC |
| SRR4947501 | root | Al | 4.63 | MC |
| SRR4947502 | root | control | 0.75 | MC |
| SRR4947505 | root | control | 5.51 | MC |
| SRR4947506 | root | Al | 0.98 | MC |
| SRR4947509 | root | Al | 3.63 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.73 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.81 | MC |
| SRR6502106 | root | control | 0.68 | MC |
| SRR6502108 | root | control | 0.44 | MC |
| SRR6441555 | seedling | wild_type | 0.25 | MC |
| SRR2154085 | seedling | wt | 1.10 | MC |
| SRR2154087 | seedling | wt | 2.86 | MC |
| SRR358792 | seedling | wt | 1.18 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.37 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.60 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.43 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.50 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.69 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.01 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.31 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.64 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.01 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.07 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.46 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.58 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.41 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.42 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.80 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.63 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.67 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.50 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.85 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.46 | MC |