| SRR358795 | callus | wt | 5.31 | MC |
| SRR358798 | callus | wt | 6.73 | MC |
| SRR5560727 | caryopsis | wild_type | 0.39 | MC |
| SRR5560729 | caryopsis | wild_type | 0.97 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR4947495 | root | control | 2.22 | MC |
| SRR7265400 | coleoptile | 2dA | 0.69 | MC |
| SRR7265401 | coleoptile | 2dA | 0.48 | MC |
| SRR7265402 | coleoptile | 2dA | 1.10 | MC |
| SRR7265403 | coleoptile | 2dN | 0.92 | MC |
| SRR7265404 | coleoptile | 2dN | 2.56 | MC |
| SRR7265405 | coleoptile | 2dN | 1.96 | MC |
| SRR7265409 | coleoptile | 3dN | 1.07 | MC |
| SRR7265410 | coleoptile | 3dN | 0.51 | MC |
| SRR7265411 | coleoptile | 3dN | 1.09 | MC |
| SRR7265415 | coleoptile | 4dN | 2.54 | MC |
| SRR7265416 | coleoptile | 4dN | 2.29 | MC |
| SRR7265417 | coleoptile | 4dN | 1.84 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.06 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.63 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.14 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.84 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265376 | embryo | 1hA | 0.85 | MC |
| SRR7265377 | embryo | 1hA | 0.72 | MC |
| SRR7265378 | embryo | 1hA | 1.02 | MC |
| SRR7265379 | embryo | 1hN | 1.42 | MC |
| SRR7265380 | embryo | 1hN | 0.92 | MC |
| SRR7265381 | embryo | 1hN | 1.34 | MC |
| SRR7265382 | embryo | 3hA | 1.46 | MC |
| SRR7265383 | embryo | 3hA | 0.96 | MC |
| SRR7265384 | embryo | 3hA | 1.60 | MC |
| SRR7265385 | embryo | 3hN | 1.61 | MC |
| SRR7265386 | embryo | 3hN | 1.00 | MC |
| SRR7265387 | embryo | 3hN | 0.80 | MC |
| SRR7265388 | embryo | 12hA | 4.40 | MC |
| SRR7265391 | embryo | 12hN | 3.50 | MC |
| SRR7265392 | embryo | 12hN | 3.17 | MC |
| SRR7265393 | embryo | 12hN | 3.72 | MC |
| SRR7265394 | embryo | 24hA | 2.82 | MC |
| SRR7265395 | embryo | 24hA | 2.61 | MC |
| SRR7265396 | embryo | 24hA | 2.59 | MC |
| SRR7265397 | embryo | 24hN | 3.58 | MC |
| SRR7265398 | embryo | 24hN | 4.19 | MC |
| SRR7265399 | embryo | 24hN | 4.45 | MC |
| SRR2338867 | endosprem | control | 0.41 | MC |
| SRR2338868 | endosprem | high_temperature | 0.83 | MC |
| SRR2338869 | endosprem | high_temperature | 1.25 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.09 | MC |
| SRR1213691 | flower | wt | 3.66 | MC |
| SRR8060837 | leaf | wild_type | 0.37 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.26 | MC |
| SRR5856927 | leaf | control | 0.28 | MC |
| SRR5856929 | leaf | control | 0.16 | MC |
| SRR5856932 | leaf | salt | 0.33 | MC |
| SRR5856935 | leaf | control | 0.42 | MC |
| SRR5856936 | leaf | salt | 0.23 | MC |
| SRR5110429 | panicle | Dawn | 2.24 | MC |
| SRR5110430 | panicle | Dawn | 1.21 | MC |
| SRR5110431 | panicle | Dawn | 1.41 | MC |
| SRR5110432 | panicle | Dawn | 1.15 | MC |
| SRR4947496 | root | control | 1.66 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.64 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.69 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.09 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.15 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.97 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.49 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.99 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.88 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.18 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.52 | MC |
| SRR5110445 | panicle | Dusk | 1.56 | MC |
| SRR5110446 | panicle | Dusk | 1.25 | MC |
| SRR5110447 | panicle | Dusk | 2.34 | MC |
| SRR5110448 | panicle | Dusk | 2.08 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.79 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.24 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.23 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.21 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.81 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.22 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.73 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.15 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.44 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.90 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.69 | MC |
| SRR1633185 | panicle | WT | 0.75 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.39 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.10 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5126147 | root | "mock,1_day" | 1.62 | MC |
| SRR5126148 | root | "mock,1_day" | 1.32 | MC |
| SRR5126149 | root | "mock,1_day" | 0.49 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.51 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.74 | MC |
| SRR5126153 | root | "mock,7_days" | 1.76 | MC |
| SRR5126155 | root | "mock,7_days" | 0.83 | MC |
| SRR5126157 | root | "mock,7_days" | 0.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.30 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.84 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.24 | MC |
| SRR5126165 | root | "mock,14_days" | 2.34 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126169 | root | "mock,14_days" | 2.10 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.60 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.57 | MC |
| SRR1213694 | root | wt | 1.25 | MC |
| SRR4947478 | root | control | 1.10 | MC |
| SRR4947479 | root | control | 2.66 | MC |
| SRR4947480 | root | control | 2.76 | MC |
| SRR4947481 | root | control | 3.39 | MC |
| SRR4947483 | root | Al | 2.92 | MC |
| SRR4947484 | root | Al | 2.69 | MC |
| SRR4947485 | root | Al | 1.00 | MC |
| SRR4947487 | root | control | 2.35 | MC |
| SRR4947488 | root | control | 2.03 | MC |
| SRR4947489 | root | control | 1.60 | MC |
| SRR4947490 | root | Al | 1.24 | MC |
| SRR4947491 | root | Al | 2.16 | MC |
| SRR4947492 | root | Al | 2.90 | MC |
| SRR4947493 | root | Al | 2.23 | MC |
| SRR4947497 | root | control | 1.50 | MC |
| SRR4947498 | root | Al | 1.72 | MC |
| SRR4947499 | root | Al | 2.11 | MC |
| SRR4947500 | root | Al | 1.73 | MC |
| SRR4947501 | root | Al | 3.43 | MC |
| SRR4947502 | root | control | 0.95 | MC |
| SRR4947503 | root | control | 2.07 | MC |
| SRR4947504 | root | control | 3.11 | MC |
| SRR4947505 | root | control | 2.63 | MC |
| SRR4947506 | root | Al | 0.86 | MC |
| SRR4947507 | root | Al | 4.41 | MC |
| SRR4947508 | root | Al | 0.94 | MC |
| SRR4947509 | root | Al | 1.53 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502108 | root | control | 0.96 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.75 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.96 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.77 | MC |
| SRR2154083 | seedling | wt | 0.38 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.46 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.54 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.45 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.64 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.13 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.54 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.67 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.40 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.31 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.09 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.42 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.93 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.74 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.41 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.13 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.35 | MC |