| SRR4457250 | 2nd_leaf | DAH4 | 0.70 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.18 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.71 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.69 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.80 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.20 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.08 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.68 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.58 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.70 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.83 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.82 | MC |
| SRR3745127 | anther | wt | 1.05 | MC |
| SRR6320498 | carpel | wt | 2.53 | MC |
| SRR5560727 | caryopsis | wild_type | 1.92 | MC |
| SRR5560728 | caryopsis | wild_type | 3.57 | MC |
| SRR5560729 | caryopsis | wild_type | 4.82 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.17 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.62 | MC |
| SRR4947495 | root | control | 4.62 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.07 | MC |
| SRR7265405 | coleoptile | 2dN | 2.14 | MC |
| SRR7265407 | coleoptile | 3dA | 0.57 | MC |
| SRR7265408 | coleoptile | 3dA | 0.73 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR7265378 | embryo | 1hA | 0.77 | MC |
| SRR7265382 | embryo | 3hA | 0.94 | MC |
| SRR7265387 | embryo | 3hN | 1.01 | MC |
| SRR7265388 | embryo | 12hA | 1.68 | MC |
| SRR7265392 | embryo | 12hN | 1.41 | MC |
| SRR7265393 | embryo | 12hN | 1.41 | MC |
| SRR7265396 | embryo | 24hA | 3.88 | MC |
| SRR7265399 | embryo | 24hN | 2.55 | MC |
| SRR2338867 | endosprem | control | 2.22 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.55 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.00 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.38 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.82 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.83 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.56 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.75 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.11 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.49 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.69 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.30 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.67 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.07 | MC |
| SRR8060835 | leaf | wild_type | 2.38 | MC |
| SRR8060836 | leaf | wild_type | 1.75 | MC |
| SRR8060837 | leaf | wild_type | 1.65 | MC |
| SRR8240824 | leaf | wild_type | 0.35 | MC |
| SRR8240826 | leaf | wild_type | 1.44 | MC |
| SRR8240819 | leaf | wild_type | 0.63 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.23 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.91 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.84 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.97 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.64 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.79 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.59 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.20 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.24 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.08 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.25 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.25 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.91 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.83 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.87 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.99 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.86 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.88 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.11 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.76 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.01 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.88 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.56 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.27 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.47 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.68 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.91 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.52 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.48 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.17 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.85 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.53 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.14 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.83 | MC |
| SRR1761528 | leaf | drought | 1.51 | MC |
| SRR1761529 | leaf | drought | 1.12 | MC |
| SRR1761531 | leaf | control | 0.83 | MC |
| SRR504365 | leaf | wt | 0.98 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.39 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.27 | MC |
| SRR6417967 | leaf | H2O_control | 1.03 | MC |
| SRR6417968 | leaf | H2O_control | 1.52 | MC |
| SRR6417969 | leaf | H2O_control | 2.39 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.94 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.99 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.22 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.30 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.97 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.48 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.74 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.48 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.90 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.23 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.53 | MC |
| SRR1213693 | leaf | wt | 3.01 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502088 | leaf | control | 0.52 | MC |
| SRR6502090 | leaf | control | 0.45 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.24 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502100 | leaf | control | 0.53 | MC |
| SRR6502102 | leaf | control | 0.88 | MC |
| SRR5856930 | leaf | salt | 0.77 | MC |
| SRR5856931 | leaf | salt | 0.19 | MC |
| SRR5856935 | leaf | control | 0.25 | MC |
| SRR5856938 | leaf | salt | 0.20 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 5.99 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 6.88 | MC |
| SRR6168973 | leaf | none (control) | 3.80 | MC |
| SRR6168975 | leaf | none (control) | 2.14 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.72 | MC |
| SRR6168980 | leaf | none (control) | 0.25 | MC |
| SRR6168981 | leaf | none (control) | 0.98 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.96 | MC |
| SRR8582888 | panicle | AM | 0.71 | MC |
| SRR8582889 | panicle | AM | 0.45 | MC |
| SRR8582890 | panicle | AM | 0.47 | MC |
| SRR8582891 | panicle | PM | 2.68 | MC |
| SRR8582892 | panicle | PM | 5.04 | MC |
| SRR8582893 | panicle | PM | 0.70 | MC |
| SRR5110432 | panicle | Dawn | 1.00 | MC |
| SRR4947496 | root | control | 4.12 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.84 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.93 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.37 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.03 | MC |
| SRR1633182 | panicle | WT | 3.05 | MC |
| SRR1633185 | panicle | WT | 4.05 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.54 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.50 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.39 | MC |
| SRR5126147 | root | "mock,1_day" | 0.46 | MC |
| SRR5126148 | root | "mock,1_day" | 1.42 | MC |
| SRR5126149 | root | "mock,1_day" | 0.59 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.07 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.87 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126155 | root | "mock,7_days" | 1.02 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.57 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.34 | MC |
| SRR5126165 | root | "mock,14_days" | 0.72 | MC |
| SRR5126167 | root | "mock,14_days" | 0.73 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.34 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.70 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.84 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.76 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.02 | MC |
| SRR1213694 | root | wt | 0.72 | MC |
| SRR1213695 | root | wt | 2.98 | MC |
| SRR4947478 | root | control | 3.35 | MC |
| SRR4947479 | root | control | 3.96 | MC |
| SRR4947480 | root | control | 4.47 | MC |
| SRR4947484 | root | Al | 4.80 | MC |
| SRR4947487 | root | control | 4.32 | MC |
| SRR4947488 | root | control | 4.14 | MC |
| SRR4947493 | root | Al | 4.33 | MC |
| SRR4947494 | root | control | 3.65 | MC |
| SRR4947497 | root | control | 5.55 | MC |
| SRR4947503 | root | control | 4.65 | MC |
| SRR4947505 | root | control | 5.23 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.35 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.82 | MC |
| SRR6502093 | root | 100 mM NaCl | 4.57 | MC |
| SRR6502094 | root | control | 3.90 | MC |
| SRR6502095 | root | control | 4.15 | MC |
| SRR6502096 | root | control | 0.42 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.70 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.07 | MC |
| SRR6502106 | root | control | 3.67 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.28 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.58 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.01 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.45 | MC |
| SRR6441555 | seedling | wild_type | 0.71 | MC |
| SRR2154082 | seedling | wt | 2.57 | MC |
| SRR2154083 | seedling | wt | 2.22 | MC |
| SRR2154087 | seedling | wt | 1.55 | MC |
| SRR3098741 | seedling | wt | 0.94 | MC |
| SRR3098742 | seedling | wt | 0.51 | MC |
| SRR3098743 | seedling | wt | 0.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.06 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.15 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.82 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.43 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.78 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.42 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.52 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.24 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.60 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.29 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.39 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.81 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.03 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.76 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.78 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.37 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.00 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.14 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.53 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.62 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.48 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.23 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.78 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.64 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.68 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.22 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.77 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.87 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.76 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.29 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.05 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.24 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.25 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.78 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.07 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.59 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.69 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.02 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.04 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 7.76 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.36 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.42 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.95 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.93 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.69 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 6.89 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.73 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.49 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.36 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.36 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.58 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.22 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.47 | MC |