| SRR4457252 | 2nd_leaf | DAH12 | 0.36 | MC |
| SRR5560727 | caryopsis | wild_type | 0.52 | MC |
| SRR5560728 | caryopsis | wild_type | 0.56 | MC |
| SRR5560729 | caryopsis | wild_type | 0.80 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.90 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.97 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR4947495 | root | control | 0.60 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.33 | MC |
| SRR7265401 | coleoptile | 2dA | 0.38 | MC |
| SRR7265403 | coleoptile | 2dN | 0.39 | MC |
| SRR7265406 | coleoptile | 3dA | 0.38 | MC |
| SRR7265407 | coleoptile | 3dA | 0.60 | MC |
| SRR7265409 | coleoptile | 3dN | 0.75 | MC |
| SRR7265410 | coleoptile | 3dN | 0.42 | MC |
| SRR7265411 | coleoptile | 3dN | 0.62 | MC |
| SRR7265414 | coleoptile | 4dA | 0.55 | MC |
| SRR7265415 | coleoptile | 4dN | 0.54 | MC |
| SRR7265416 | coleoptile | 4dN | 0.95 | MC |
| SRR7265417 | coleoptile | 4dN | 0.82 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.07 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.26 | MC |
| SRR2338867 | endosprem | control | 0.45 | MC |
| SRR2338869 | endosprem | high_temperature | 1.81 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.27 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.34 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.57 | MC |
| SRR1213691 | flower | wt | 1.12 | MC |
| SRR8060836 | leaf | wild_type | 0.46 | MC |
| SRR8240824 | leaf | wild_type | 2.22 | MC |
| SRR8240825 | leaf | wild_type | 0.94 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.04 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.58 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.26 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.02 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.23 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.47 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.45 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.47 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.45 | MC |
| SRR1761530 | leaf | control | 0.47 | MC |
| SRR1761531 | leaf | control | 0.45 | MC |
| SRR504365 | leaf | wt | 0.27 | MC |
| SRR6417969 | leaf | H2O_control | 0.44 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.32 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.56 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.90 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.38 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.21 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.93 | MC |
| SRR1213692 | leaf | wt | 0.48 | MC |
| SRR6502088 | leaf | control | 0.38 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502100 | leaf | control | 0.82 | MC |
| SRR6502101 | leaf | control | 0.99 | MC |
| SRR6502102 | leaf | control | 0.50 | MC |
| SRR5856927 | leaf | control | 0.58 | MC |
| SRR5856928 | leaf | control | 0.52 | MC |
| SRR5856929 | leaf | control | 0.67 | MC |
| SRR5856930 | leaf | salt | 0.45 | MC |
| SRR5856931 | leaf | salt | 0.88 | MC |
| SRR5856933 | leaf | control | 0.44 | MC |
| SRR5856934 | leaf | control | 0.38 | MC |
| SRR5856935 | leaf | control | 0.59 | MC |
| SRR5856936 | leaf | salt | 0.25 | MC |
| SRR5856937 | leaf | salt | 0.23 | MC |
| SRR5856938 | leaf | salt | 0.43 | MC |
| SRR6168973 | leaf | none (control) | 0.26 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.06 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.17 | MC |
| SRR8582888 | panicle | AM | 0.40 | MC |
| SRR8582889 | panicle | AM | 0.35 | MC |
| SRR8582890 | panicle | AM | 0.54 | MC |
| SRR8582893 | panicle | PM | 0.43 | MC |
| SRR5110429 | panicle | Dawn | 0.45 | MC |
| SRR5110430 | panicle | Dawn | 0.58 | MC |
| SRR5110431 | panicle | Dawn | 0.83 | MC |
| SRR5110432 | panicle | Dawn | 0.72 | MC |
| SRR4947496 | root | control | 0.58 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.56 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.84 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.63 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.92 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.85 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.66 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.44 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.82 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.04 | MC |
| SRR5110445 | panicle | Dusk | 1.80 | MC |
| SRR5110446 | panicle | Dusk | 2.01 | MC |
| SRR5110447 | panicle | Dusk | 1.77 | MC |
| SRR5110448 | panicle | Dusk | 1.66 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.72 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.44 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.99 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.95 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.09 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.98 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.66 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.45 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.40 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.41 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.29 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.23 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.86 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.53 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.40 | MC |
| SRR5126147 | root | "mock,1_day" | 0.55 | MC |
| SRR5126148 | root | "mock,1_day" | 0.28 | MC |
| SRR5126153 | root | "mock,7_days" | 0.45 | MC |
| SRR5126155 | root | "mock,7_days" | 0.31 | MC |
| SRR5126169 | root | "mock,14_days" | 0.47 | MC |
| SRR4947479 | root | control | 0.56 | MC |
| SRR4947480 | root | control | 0.56 | MC |
| SRR4947484 | root | Al | 0.55 | MC |
| SRR4947487 | root | control | 0.49 | MC |
| SRR4947488 | root | control | 0.53 | MC |
| SRR4947490 | root | Al | 0.57 | MC |
| SRR4947491 | root | Al | 0.84 | MC |
| SRR4947494 | root | control | 0.72 | MC |
| SRR4947503 | root | control | 0.64 | MC |
| SRR4947504 | root | control | 1.05 | MC |
| SRR4947506 | root | Al | 0.42 | MC |
| SRR4947507 | root | Al | 0.83 | MC |
| SRR4947508 | root | Al | 0.86 | MC |
| SRR4947509 | root | Al | 0.75 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.30 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.38 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.28 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.33 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.23 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.73 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.49 | MC |
| SRR6441554 | seedling | wild_type | 1.33 | MC |
| SRR6441555 | seedling | wild_type | 1.13 | MC |
| SRR2154086 | seedling | wt | 0.76 | MC |
| SRR2154082 | seedling | wt | 1.26 | MC |
| SRR2154083 | seedling | wt | 2.76 | MC |
| SRR2154084 | seedling | wt | 2.38 | MC |
| SRR2154085 | seedling | wt | 1.54 | MC |
| SRR2154087 | seedling | wt | 1.25 | MC |
| SRR3098741 | seedling | wt | 0.80 | MC |
| SRR3098742 | seedling | wt | 0.81 | MC |
| SRR3098743 | seedling | wt | 1.37 | MC |
| SRR1944583 | seedling | no_treatment | 0.43 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.48 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.47 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.19 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.85 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.98 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.85 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.69 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.92 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.54 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.95 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.37 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.27 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.45 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.98 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.19 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.65 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.01 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.18 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.82 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.70 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.86 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.30 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.07 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.27 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.15 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.05 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.27 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.16 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.59 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.84 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.88 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.90 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.14 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.99 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.98 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.79 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.99 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.65 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.72 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.97 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.22 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.68 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.55 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.69 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.93 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.57 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.29 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.30 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.55 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.27 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.68 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.71 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.72 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.56 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.16 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.03 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.08 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.41 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.02 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.21 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.88 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.86 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.99 | MC |