| SRR4457260 | 2nd_leaf | DAH28 | 0.27 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.65 | MC |
| SRR6320473 | carpel | wt | 3.22 | MC |
| SRR6320498 | carpel | wt | 1.55 | MC |
| SRR5560727 | caryopsis | wild_type | 0.60 | MC |
| SRR5560728 | caryopsis | wild_type | 2.17 | MC |
| SRR4947495 | root | control | 4.85 | MC |
| SRR7265412 | coleoptile | 4dA | 1.08 | MC |
| SRR7265413 | coleoptile | 4dA | 5.02 | MC |
| SRR7265414 | coleoptile | 4dA | 2.71 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.27 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.83 | MC |
| SRR7265378 | embryo | 1hA | 0.40 | MC |
| SRR7265379 | embryo | 1hN | 0.82 | MC |
| SRR7265381 | embryo | 1hN | 0.29 | MC |
| SRR7265382 | embryo | 3hA | 0.90 | MC |
| SRR7265383 | embryo | 3hA | 0.42 | MC |
| SRR7265384 | embryo | 3hA | 1.11 | MC |
| SRR7265385 | embryo | 3hN | 0.77 | MC |
| SRR7265388 | embryo | 12hA | 4.01 | MC |
| SRR7265389 | embryo | 12hA | 4.23 | MC |
| SRR7265390 | embryo | 12hA | 3.63 | MC |
| SRR7265391 | embryo | 12hN | 2.79 | MC |
| SRR7265392 | embryo | 12hN | 2.29 | MC |
| SRR7265393 | embryo | 12hN | 1.84 | MC |
| SRR2338866 | endosprem | control | 3.72 | MC |
| SRR2338867 | endosprem | control | 0.61 | MC |
| SRR2338868 | endosprem | high_temperature | 0.77 | MC |
| SRR976168 | flag_leaf | wild_type | 0.49 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.20 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.34 | MC |
| SRR8060835 | leaf | wild_type | 0.55 | MC |
| SRR8060836 | leaf | wild_type | 0.64 | MC |
| SRR8060837 | leaf | wild_type | 0.22 | MC |
| SRR8240824 | leaf | wild_type | 1.64 | MC |
| SRR8240818 | leaf | wild_type | 0.70 | MC |
| SRR8240820 | leaf | wild_type | 0.31 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.83 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.65 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.03 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.57 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.89 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.75 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.47 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.64 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.70 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.67 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.26 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.81 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.38 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.07 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.80 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.60 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.36 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.97 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.58 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.39 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.87 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.68 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.22 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.17 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.91 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.22 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.17 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.91 | MC |
| SRR1761528 | leaf | drought | 1.22 | MC |
| SRR1761529 | leaf | drought | 1.17 | MC |
| SRR1761531 | leaf | control | 0.91 | MC |
| SRR504365 | leaf | wt | 0.31 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.60 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.47 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.63 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.89 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.39 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.51 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.72 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.77 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.51 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.01 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.25 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.91 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.06 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.73 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.78 | MC |
| SRR1213692 | leaf | wt | 0.39 | MC |
| SRR1213693 | leaf | wt | 0.86 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.52 | MC |
| SRR6502088 | leaf | control | 1.02 | MC |
| SRR6502089 | leaf | control | 0.95 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.75 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.46 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6502101 | leaf | control | 0.80 | MC |
| SRR5856930 | leaf | salt | 0.31 | MC |
| SRR5856931 | leaf | salt | 0.79 | MC |
| SRR5856936 | leaf | salt | 0.93 | MC |
| SRR5856937 | leaf | salt | 0.86 | MC |
| SRR5856938 | leaf | salt | 1.69 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.29 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.43 | MC |
| SRR6168973 | leaf | none (control) | 2.98 | MC |
| SRR6168974 | leaf | none (control) | 4.37 | MC |
| SRR6168975 | leaf | none (control) | 1.00 | MC |
| SRR6168979 | leaf | none (control) | 0.20 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR8582888 | panicle | AM | 0.31 | MC |
| SRR8582889 | panicle | AM | 0.27 | MC |
| SRR8582890 | panicle | AM | 0.33 | MC |
| SRR8582891 | panicle | PM | 0.75 | MC |
| SRR8582893 | panicle | PM | 0.38 | MC |
| SRR4947496 | root | control | 4.54 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.81 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.87 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.33 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.13 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.03 | MC |
| SRR5110446 | panicle | Dusk | 4.01 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.20 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.44 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.15 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.11 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.74 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.16 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.81 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.90 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.98 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.04 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.51 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.07 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.42 | MC |
| SRR5126153 | root | "mock,7_days" | 3.86 | MC |
| SRR5126157 | root | "mock,7_days" | 5.28 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.34 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.70 | MC |
| SRR5126165 | root | "mock,14_days" | 2.20 | MC |
| SRR5126167 | root | "mock,14_days" | 1.75 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.92 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.00 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.48 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.80 | MC |
| SRR1213694 | root | wt | 0.53 | MC |
| SRR1213695 | root | wt | 0.86 | MC |
| SRR4947478 | root | control | 4.04 | MC |
| SRR4947480 | root | control | 3.62 | MC |
| SRR4947482 | root | Al | 3.09 | MC |
| SRR4947483 | root | Al | 3.23 | MC |
| SRR4947485 | root | Al | 4.74 | MC |
| SRR4947487 | root | control | 4.43 | MC |
| SRR4947488 | root | control | 4.26 | MC |
| SRR4947494 | root | control | 1.21 | MC |
| SRR4947498 | root | Al | 4.79 | MC |
| SRR4947502 | root | control | 4.37 | MC |
| SRR4947506 | root | Al | 1.56 | MC |
| SRR4947507 | root | Al | 2.59 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.90 | MC |
| SRR6502094 | root | control | 4.55 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.22 | MC |
| SRR6502106 | root | control | 3.33 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.61 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.65 | MC |
| SRR6441554 | seedling | wild_type | 2.19 | MC |
| SRR3098741 | seedling | wt | 0.77 | MC |
| SRR3098742 | seedling | wt | 0.49 | MC |
| SRR3098743 | seedling | wt | 1.36 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.47 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.51 | MC |
| SRR1944583 | seedling | no_treatment | 0.67 | MC |
| SRR358791 | seedling | wt | 0.67 | MC |
| SRR358792 | seedling | wt | 0.64 | MC |
| SRR358793 | seedling | wt | 0.57 | MC |
| SRR358794 | seedling | wt | 1.10 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.18 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.93 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.71 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.76 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.83 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.68 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.36 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.41 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.67 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.31 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.42 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.83 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.58 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.36 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.10 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.04 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.20 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.21 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.15 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.97 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.72 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.55 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.60 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.94 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.43 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.89 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.92 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.06 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.15 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.68 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.00 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.55 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.54 | MC |